View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_135 (Length: 251)
Name: NF0836_low_135
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_135 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 5 - 241
Target Start/End: Original strand, 25939678 - 25939914
Alignment:
| Q |
5 |
ttgaatctatccttaaagaaaggtcagattcaccaaccaattttgtggttgaacttggtaagttattacatgaatgtcaaaccacctccatcaatggagc |
104 |
Q |
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| T |
25939678 |
ttgaatctatccttaaagaaaggtcagattcaccaaccaattttgtggttgaacttcgtaagttattacatgaatgtcaaaccacctccatcaatggagc |
25939777 |
T |
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| Q |
105 |
ttcctgcagtccgcttcagtttgatagatgtctcaagctattctccctgaagaagtttgtgtttcatgaaacaatcaaacaattaaaggcagaactgaga |
204 |
Q |
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|||||||||||| |||||||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||| |||||||||||||||||||||| |
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| T |
25939778 |
ttcctgcagtccacttcagtttgatagatgtctcaagctattctctctgaagaaatttgtgtttcatggaacaatcagacaattaaaggcagaactgaga |
25939877 |
T |
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| Q |
205 |
atttccaataatgattctctacatccgtttccctttg |
241 |
Q |
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||||||||||| || ||||||||||| ||||| |||| |
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| T |
25939878 |
atttccaataacgactctctacatccttttccttttg |
25939914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 118 - 241
Target Start/End: Original strand, 25949419 - 25949545
Alignment:
| Q |
118 |
cttcagtttgatagatgtctcaagctattctccctgaag---aagtttgtgtttcatgaaacaatcaaacaattaaaggcagaactgagaatttccaata |
214 |
Q |
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| T |
25949419 |
cttcagtttgatagatgtctcaagctcttcttcctgaagaagaagtttgtgtttcatggaacaatcaaacaataaaaggcagaactgagaatttccaaca |
25949518 |
T |
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| Q |
215 |
atgattctctacatccgtttccctttg |
241 |
Q |
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| T |
25949519 |
ttgactctctacatccttttccctttg |
25949545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 118 - 203
Target Start/End: Original strand, 25953114 - 25953202
Alignment:
| Q |
118 |
cttcagtttgatagatgtctcaagctattctccctgaag---aagtttgtgtttcatgaaacaatcaaacaattaaaggcagaactgag |
203 |
Q |
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|||||||||||||||||||||||||| |||| ||||||| |||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25953114 |
cttcagtttgatagatgtctcaagctcttcttcctgaagaagaagtttgtgtttcatggaacaatcaaacaattaaaggcagaactgag |
25953202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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