View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_140 (Length: 251)
Name: NF0836_low_140
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_140 |
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Alignment Details
Target: chr2 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 11424168 - 11423929
Alignment:
| Q |
1 |
tgtaagatcaacacctccctcctcaccagttatcacatcaccagcacaccttccggttaaaagttccaaaagtatcacgccgaaagcatagacatctgac |
100 |
Q |
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| T |
11424168 |
tgtaagatcaacacctccctcctcaccagttatcacatcaccagcacaccttccggttaaaagttccaaaagtatcacgccgaaagcatagacatctgac |
11424069 |
T |
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| Q |
101 |
ttgaaggaaggcattggcttcttggaagcagctaactctggtgcgcgataacctaagacaccggcgtcaagaatctgctcaatagtaccagcttgagtca |
200 |
Q |
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| T |
11424068 |
ttgaaagaaggcattggcttcttggaagcagctaactctggtgcgcgataacctaagacaccggcgtcaagaatctgctcaatagtaccagcttgagtca |
11423969 |
T |
|
| Q |
201 |
taagtcggtgaagacaataatcagcgacacgtgcattcat |
240 |
Q |
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| T |
11423968 |
taagtcggtgaagacaataatcagcgacacgtgcattcat |
11423929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 4 - 240
Target Start/End: Original strand, 32304389 - 32304624
Alignment:
| Q |
4 |
aagatcaacacctccctcctcaccagttatcacatcaccagcacaccttccggttaaaagttccaaaagtatcacgccgaaagcatagacatctgacttg |
103 |
Q |
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||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||| ||||| |||||| || |||||||||||||| |
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| T |
32304389 |
aagatcaacacctccctcctcactagttatcacatcacaagcacaccttccggttaaaagttcaaaaagcatcacaccgaaaacaaagacatctgacttg |
32304488 |
T |
|
| Q |
104 |
aaggaaggcattggcttcttggaagcagctaactctggtgcgcgataacctaagacaccggcgtcaagaatctgctcaatagtaccagcttgagtcataa |
203 |
Q |
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| T |
32304489 |
aaggaaggcattgtcttcttggaagcagttaactccggaacgtgataacctaagacacaagcatcaagaatctgttcaatagta-tagcctgagtcataa |
32304587 |
T |
|
| Q |
204 |
gtcggtgaagacaataatcagcgacacgtgcattcat |
240 |
Q |
| |
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|||| ||||||||||||||| | |||| ||||||||| |
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| T |
32304588 |
gtcgatgaagacaataatcaacaacacatgcattcat |
32304624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 10 - 222
Target Start/End: Original strand, 9322962 - 9323177
Alignment:
| Q |
10 |
aacacctccctcctcaccagttatcacatcaccagcacaccttccggttaaaagttccaaaagtatcacgccgaaagcatagacatctgacttgaaggaa |
109 |
Q |
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||||||||||||||| ||||||| ||||||||||||||| |||| ||||||||||| ||||||||||||||| ||| | ||||||||||||||||||||| |
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| T |
9322962 |
aacacctccctcctcgccagttaccacatcaccagcacaacttctggttaaaagtttcaaaagtatcacgccaaaaccttagacatctgacttgaaggaa |
9323061 |
T |
|
| Q |
110 |
ggcattggcttcttggaagcagctaactctggtgcgcgataacctaagacaccggcgtcaagaatctgctcaa---tagtaccagcttgagtcataagtc |
206 |
Q |
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|||||||||||||| |||||||||||||| |||||| ||||||||||||||| | ||||| |||| |||||||||||||||||||||||| |
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| T |
9323062 |
ggcattggcttctttgaagcagctaactcgtgtgcgcaataacctaagacaccataagagaaaatctattcaatagtagtaccagcttgagtcataagtc |
9323161 |
T |
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| Q |
207 |
ggtgaagacaataatc |
222 |
Q |
| |
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||| |||||||||||| |
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|
| T |
9323162 |
ggtcaagacaataatc |
9323177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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