View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_142 (Length: 250)
Name: NF0836_low_142
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_142 |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 11 - 239
Target Start/End: Original strand, 32162431 - 32162659
Alignment:
| Q |
11 |
ttgatgatcacaccaagaattcttcatcgtcttcactgcaaaaaatggagcttcttcacctatcaccactacagttaccaccaccatacacccaacaacc |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32162431 |
ttgatgatcacaccaagaattcttcatcgtcttcactgcaaaaaatggagcttcttcacctatcaccactacagttaccaccaccatacacccaacaacc |
32162530 |
T |
|
| Q |
111 |
accttccagttccactccctccaactatccacctctcacgtatctgcaaacatcccaccaccgtcaaaaccctccacgcttccctcatcatctccggcca |
210 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32162531 |
accttccagttccactccctccaactatccacctctcacgtatctgcaaacatcccaccaccgtcaaaaccctccacgcttccctcatcatctccggcca |
32162630 |
T |
|
| Q |
211 |
tcctcccgacaccaccctcagctctctct |
239 |
Q |
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|||||||||||||||||||| |||||||| |
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| T |
32162631 |
tcctcccgacaccaccctcatctctctct |
32162659 |
T |
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