View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_143 (Length: 250)
Name: NF0836_low_143
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_143 |
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Alignment Details
Target: chr2 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 3 - 73
Target Start/End: Original strand, 7871896 - 7871966
Alignment:
| Q |
3 |
gacagaaaagaagcagatcaaatacacataattatctcaaaataacataaaaataaccttgaaattttaag |
73 |
Q |
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| T |
7871896 |
gacagaacagaagcagatcaaatacacataattatctcaaaataacataaaaataaccttgaaattttaag |
7871966 |
T |
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Target: chr2; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 250
Target Start/End: Original strand, 7872077 - 7872142
Alignment:
| Q |
184 |
gccatcataaacacacatcaaatttctatacaacaatgtaaaaacaaaggctttaacatatttacaa |
250 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||| |
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| T |
7872077 |
gccatcataaacacacatcaaatttctatacaacaatgtaaaaacaaaagctttaaca-atttacaa |
7872142 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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