View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_145 (Length: 247)
Name: NF0836_low_145
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_145 |
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Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 41977901 - 41978122
Alignment:
| Q |
1 |
ttaatgcctatgttgcaggtgctgtaattatcactctaaactcggaagaattatactactaatatcatcccttggtacgaaatgcaatgcgatatatgat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41977901 |
ttaatgcctatgttgcaggtgctgtaattatcactctaaactcggaagaattatactactaatatcatcccttggtacgaaatgcaatgcgatatatgat |
41978000 |
T |
|
| Q |
101 |
aaggtattgatttaatatttttattatttgtttcattcatctgccttacatatttatttgaatttcatgacaaaactcaatttgctttctctgttaactt |
200 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41978001 |
aaggtattgatttaatatttttattatttgtttcattcatctgccttacatatttatttgaatttcatgacaaaactcaatttgctttctctgttaactt |
41978100 |
T |
|
| Q |
201 |
tcagggaaagtcgtgttcgatg |
222 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
41978101 |
tcagggaaagtcgtgttcgatg |
41978122 |
T |
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