View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_147 (Length: 242)
Name: NF0836_low_147
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_147 |
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Alignment Details
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 47561178 - 47561399
Alignment:
| Q |
1 |
tgagtctgagcttaaaaaggaaccagattcctcaggaggggagccatctgaaaaatcaattgctgttagcgaagagaagaagcaagatactgaggtgtct |
100 |
Q |
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| T |
47561178 |
tgagtctgagcttaaaaaggaaccaggttcctcaggaggggagccatctgaaaaatcaattgctgttagcgaagagaagaagcaagatactgaggtgtct |
47561277 |
T |
|
| Q |
101 |
agttctaaggagagtgtatgacatttgtaatagatgtgatatgatgagtaggtatcaaattttcaccatgacaatatatattcnnnnnnncattcttctt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
47561278 |
agttctaaggagagtgtatgacatttgtaatagatgtgatatgatgagtaggtatcaaattttcaccatgacaatatatattcaaaaaaacattcttctt |
47561377 |
T |
|
| Q |
201 |
taacaaatatctgttaatttat |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
47561378 |
taacaaatatctgttaatttat |
47561399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 112; Significance: 1e-56; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 1 - 182
Target Start/End: Original strand, 38969262 - 38969440
Alignment:
| Q |
1 |
tgagtctgagcttaaaaaggaaccagattcctcaggaggggagccatctgaaaaatcaattgctgttagcgaagagaagaagcaagatactgaggtgtct |
100 |
Q |
| |
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|||||||||||||||||| || ||||||||| |||||| |||||||||||| ||||| | |||| ||||||||| |||||||||| || ||||| || |
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| T |
38969262 |
tgagtctgagcttaaaaatgacccagattccacaggagaggagccatctgagaaatcta---ctgtgagcgaagaggagaagcaagacacagaggtaact |
38969358 |
T |
|
| Q |
101 |
agttctaaggagagtgtatgacatttgtaatagatgtgatatgatgagtaggtatcaaattttcaccatgacaatatatatt |
182 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
38969359 |
agttctaaggagagtgtatgacatttgtaatagatgtgatatgataagtaggtatcaaatttttaccatgacaatatatatt |
38969440 |
T |
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