View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_148 (Length: 240)
Name: NF0836_low_148
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_148 |
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Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 157
Target Start/End: Original strand, 10593479 - 10593633
Alignment:
| Q |
3 |
cctttactttgatattcttgatatcgattccacctggaatcatatatcgatcaaaacttactcatcctgtgtaatgaaaagttgggcataattgtgtctc |
102 |
Q |
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| T |
10593479 |
cctttactttgatattcttgatatcgattccacctggaatcatatatcgatcaaaacttactcatcctgtgtaatgaaaagttgggcataattgtgtctc |
10593578 |
T |
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| Q |
103 |
agtgtaatttttctgatctttgaaggcattgtgggtctagctgttacctatgata |
157 |
Q |
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| T |
10593579 |
agtgtaatttttttgatcttttaaggcattgtgggtctagctgttacctatgata |
10593633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 14375641 - 14375686
Alignment:
| Q |
1 |
tgcctttactttgatattcttgatatcgattccacctggaatcata |
46 |
Q |
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| T |
14375641 |
tgccttttctttgatattcttgatatcgattccacctggaatcata |
14375686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41436368 - 41436323
Alignment:
| Q |
1 |
tgcctttactttgatattcttgatatcgattccacctggaatcata |
46 |
Q |
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| T |
41436368 |
tgccttttccttgatattcttgatatcgattccacctggaatcata |
41436323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 41449581 - 41449536
Alignment:
| Q |
1 |
tgcctttactttgatattcttgatatcgattccacctggaatcata |
46 |
Q |
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| T |
41449581 |
tgccttttccttgatattcttgatatcgattccacctggaatcata |
41449536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 104 - 154
Target Start/End: Original strand, 14376914 - 14376964
Alignment:
| Q |
104 |
gtgtaatttttctgatctttgaaggcattgtgggtctagctgttacctatg |
154 |
Q |
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| T |
14376914 |
gtgtcatttttctgatttttgaaggcattgctggtctagctgttacctatg |
14376964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 16 - 45
Target Start/End: Complemental strand, 14238482 - 14238453
Alignment:
| Q |
16 |
attcttgatatcgattccacctggaatcat |
45 |
Q |
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| T |
14238482 |
attcttgatatcgattccacctggaatcat |
14238453 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 110 - 154
Target Start/End: Complemental strand, 41436230 - 41436186
Alignment:
| Q |
110 |
tttttctgatctttgaaggcattgtgggtctagctgttacctatg |
154 |
Q |
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| T |
41436230 |
ttttcctgatttttgaaggcattgctggtctagctgttacctatg |
41436186 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 125
Target Start/End: Complemental strand, 32119075 - 32118988
Alignment:
| Q |
41 |
atcatatatcgatcaaaacttactcatcctgtgtaatgaaaagttgggcataattgtgtctc---agtgtaatttttctgatctttga |
125 |
Q |
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|||||||||| ||||||| |||||| | |||||| ||| ||||| ||||||||||| |||| ||||| ||||||||||| ||||| |
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| T |
32119075 |
atcatatatcaatcaaaatttactctgcttgtgtattgagaagttaggcataattgtctctccttagtgtcatttttctgatttttga |
32118988 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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