View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_15 (Length: 638)
Name: NF0836_low_15
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_15 |
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Alignment Details
Target: chr3 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 33 - 629
Target Start/End: Complemental strand, 39533430 - 39532843
Alignment:
| Q |
33 |
acaacattatacggaaaatcatggaggtgactggaagaagaagatatagaatgataccgagttttctatccccgtgcatctgacatttaattcactaaga |
132 |
Q |
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| T |
39533430 |
acaacattatacggaaaatcatggaggtgactggaagaagaagatatagaatgataccgagttttctatccccgtgcatctgacatttaattcactaaga |
39533331 |
T |
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| Q |
133 |
gtaaagatccatatcacttcaaaaagtattaattattcacttatttaaattttcaaatacatatgcacggaaaggtgcatcaaatacatgctacacttgc |
232 |
Q |
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| T |
39533330 |
gtaaagatccatatcacttcaaaaagtattaattattcacttatttaaattttaaaatacatatgcacggaaaggtacatcaaatacatgctacacttgc |
39533231 |
T |
|
| Q |
233 |
acctgcaccgcagctggtggcgatagagtgaaattgttgagacactttgtagcagtagtcactagagccaccatgttaggtggtgattttgttgatgact |
332 |
Q |
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| T |
39533230 |
acctgcaccgcagctggtggcgatagagtgaaattgttgagacactttgtagcagtggtcactagagccaccatgttaggtggtgattttgttgatgact |
39533131 |
T |
|
| Q |
333 |
ctcggccaactcatcaacaataccaccaccgtcaaaagtgactcgtcagccaacaactgtgattgaagtgcctcaacaccaccacatttttctgtcatcg |
432 |
Q |
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| T |
39533130 |
ctcggccaactcatcaacaataccaccaccgtcaaaagtgactcgtcagccaacaactgtgattgaagtgcctcaacaccaccacatttttctgtcatcg |
39533031 |
T |
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| Q |
433 |
gctgcgttgcaagtgcaatctgtttttaacgttgcttttgcattcgtgcatactgagattnnnnnnnnnnnnnngagtaataccaaagaattaataatta |
532 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||| |
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| T |
39533030 |
gctgcgttgcaagtgcaa------tttaacgttgcttttgcattcgtgcatactgagatt--aaaaaaaaaaaagagtaataccaaaaaattaataatta |
39532939 |
T |
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| Q |
533 |
acatttaaattggnnnnnnnngttaaccctcttgtttttagagaaatgagccttagtaatctaaaattcagttaagtaaagtctgcctaagaattat |
629 |
Q |
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| T |
39532938 |
acattt-aattttttttttttgataaccctcttgtttttagagaaatgagccttagtaatctaaaattcagttaagtaaagtctgcctaagaattat |
39532843 |
T |
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