View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_151 (Length: 233)
Name: NF0836_low_151
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_151 |
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Alignment Details
Target: chr3 (Bit Score: 68; Significance: 2e-30; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 71 - 138
Target Start/End: Complemental strand, 48391897 - 48391830
Alignment:
| Q |
71 |
tcatctcatataattgtatttgtatctactaactcttcccaccgtttattttccaaacatgggtgagg |
138 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48391897 |
tcatctcatataattgtatttgtatctactaactcttcccaccgtttattttccaaacatgggtgagg |
48391830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 40 - 111
Target Start/End: Complemental strand, 48392010 - 48391939
Alignment:
| Q |
40 |
gcaagtgcactccactatttacatgtaaatctcatctcatataattgtatttgtatctactaactcttccca |
111 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48392010 |
gcaagtgcactccactatttacatgcaaatctcatctcatataattgtatttgtatctactaactcttccca |
48391939 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 111
Target Start/End: Complemental strand, 48391938 - 48391898
Alignment:
| Q |
71 |
tcatctcatataattgtatttgtatctactaactcttccca |
111 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
48391938 |
tcatctcatataattgtatttgtatctactaactcttccca |
48391898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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