View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_162 (Length: 210)
Name: NF0836_low_162
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_162 |
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Alignment Details
Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 43188319 - 43188368
Alignment:
| Q |
1 |
ccttttattatcttcatggacagtgtcattgctcgaattcaacctctctg |
50 |
Q |
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| T |
43188319 |
ccttttattatcttcatggacagtttcattgctcgaattcaacctttctg |
43188368 |
T |
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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 43208670 - 43208719
Alignment:
| Q |
1 |
ccttttattatcttcatggacagtgtcattgctcgaattcaacctctctg |
50 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
43208670 |
ccttttattatcttcatggacagtgtcattgctcaaattcaacctttctg |
43208719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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