View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_164 (Length: 209)
Name: NF0836_low_164
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_164 |
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Alignment Details
Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 89
Target Start/End: Complemental strand, 26879240 - 26879152
Alignment:
| Q |
1 |
gcagaactattgtattatggatctttgcccctttgaaatactgtctctaaactagagagcaactttactcggctccacatttcttaaaa |
89 |
Q |
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| T |
26879240 |
gcagaactattgtattatggatctttgcccctttgaaatactgtctctaaactagagagcaactttactcggctccacatttcttaaaa |
26879152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 40247225 - 40247185
Alignment:
| Q |
1 |
gcagaactattgtattatggatctttgcccctttgaaatac |
41 |
Q |
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||||||||| |||||||||| |||||||||||||||||||| |
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| T |
40247225 |
gcagaactagtgtattatggctctttgcccctttgaaatac |
40247185 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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