View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_low_165 (Length: 208)

Name: NF0836_low_165
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_low_165
NF0836_low_165
[»] chr4 (8 HSPs)
chr4 (1-171)||(566055-566225)
chr4 (68-159)||(55505235-55505326)
chr4 (68-153)||(553363-553448)
chr4 (100-150)||(1528365-1528415)
chr4 (100-150)||(12120304-12120354)
chr4 (73-142)||(1548559-1548628)
chr4 (68-128)||(546822-546882)
chr4 (1-49)||(1552830-1552878)
[»] chr3 (3 HSPs)
chr3 (1-153)||(51113844-51113996)
chr3 (2-123)||(51764504-51764625)
chr3 (73-153)||(514863-514943)
[»] chr6 (3 HSPs)
chr6 (73-118)||(19632358-19632403)
chr6 (68-120)||(6603332-6603384)
chr6 (67-123)||(14818296-14818352)


Alignment Details
Target: chr4 (Bit Score: 167; Significance: 1e-89; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 171
Target Start/End: Complemental strand, 566225 - 566055
Alignment:
Q  1 gaaacactctatgtgatctcaaagtactttcgtgggcttttgcagctgtcactgcaatataatcaaaatgttacagagaagggagtgaaacacctggtgg 100  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  566225 gaaacactctatgtgatctcaaagtactgtcgtgggcttttgcagctgtcactgcaatataatcaaaatgttacagagaagggagtgaaacacctggtgg 566126  T
Q  101 aaaactgcacacaactgagagaaatcaagttggagggttgttataaagtgcatagtagtcttctttgctat 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  566125 aaaactgcacacaactgagagaaatcaagttggagggttgttataaagtgcatagtagtcttctttgctat 566055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 68 - 159
Target Start/End: Original strand, 55505235 - 55505326
Alignment:
Q  68 atgttacagagaagggagtgaaacacctggtggaaaactgcacacaactgagagaaatcaagttggagggttgttataaagtgcatagtagt 159  Q
    |||| ||||||||||||||||||||| || | ||||||||||||||||| ||||| ||||| ||| | |||||| |||||||||||| ||||    
T  55505235 atgtcacagagaagggagtgaaacacgtgttagaaaactgcacacaactaagagagatcaacttgaacggttgtgataaagtgcatactagt 55505326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 153
Target Start/End: Complemental strand, 553448 - 553363
Alignment:
Q  68 atgttacagagaagggagtgaaacacctggtggaaaactgcacacaactgagagaaatcaagttggagggttgttataaagtgcat 153  Q
    |||| ||||| || |||||||| ||  |||| ||||||||||||||||| ||||| ||| | |||| ||||||| |||||||||||    
T  553448 atgtcacagataaaggagtgaatcatgtggtagaaaactgcacacaacttagagagatcgatttggggggttgtgataaagtgcat 553363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 1528365 - 1528415
Alignment:
Q  100 gaaaactgcacacaactgagagaaatcaagttggagggttgttataaagtg 150  Q
    ||||||||||||||||||||||| || || ||| ||||||||| |||||||    
T  1528365 gaaaactgcacacaactgagagagataaatttgcagggttgttgtaaagtg 1528415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Original strand, 12120304 - 12120354
Alignment:
Q  100 gaaaactgcacacaactgagagaaatcaagttggagggttgttataaagtg 150  Q
    ||||||||||||||||||||||| || || ||| ||||||||| |||||||    
T  12120304 gaaaactgcacacaactgagagagataaatttgcagggttgttgtaaagtg 12120354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 1548559 - 1548628
Alignment:
Q  73 acagagaagggagtgaaacacctggtggaaaactgcacacaactgagagaaatcaagttggagggttgtt 142  Q
    ||||||||||||||||||||  | |  ||||||||| | |||||||||||||| || ||||| |||||||    
T  1548559 acagagaagggagtgaaacatatagaagaaaactgctcgcaactgagagaaattaatttggaaggttgtt 1548628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 128
Target Start/End: Complemental strand, 546882 - 546822
Alignment:
Q  68 atgttacagagaagggagtgaaacacctggtggaaaactgcacacaactgagagaaatcaa 128  Q
    |||| ||||||||||||||||||||  || | |||||||||||| |||| ||||| |||||    
T  546882 atgtcacagagaagggagtgaaacatgtgctagaaaactgcacaaaactaagagagatcaa 546822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 1552830 - 1552878
Alignment:
Q  1 gaaacactctatgtgatctcaaagtactttcgtgggcttttgcagctgt 49  Q
    ||||||||| ||||||| |||||| | | ||||||||||||||||||||    
T  1552830 gaaacactcaatgtgatatcaaagaattgtcgtgggcttttgcagctgt 1552878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 153
Target Start/End: Original strand, 51113844 - 51113996
Alignment:
Q  1 gaaacactctatgtgatctcaaagtactttcgtgggcttttgcagctgtcactgcaatataatcaaaatgttacagagaagggagtgaaacacctggtgg 100  Q
    |||||||||||||||||||| |||   | | ||||||||||||| |||| |||| || ||  | |  |||| ||||||||||||||||| ||  |||| |    
T  51113844 gaaacactctatgtgatctcgaagagttgttgtgggcttttgcaactgttactgaaaaattgttaccatgtcacagagaagggagtgaagcatgtggtag 51113943  T
Q  101 aaaactgcacacaactgagagaaatcaagttggagggttgttataaagtgcat 153  Q
    |||| |||||| |||| ||||| || || ||  ||||||||| ||||||||||    
T  51113944 aaaaatgcacaaaactaagagagattaatttaaagggttgttttaaagtgcat 51113996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 123
Target Start/End: Original strand, 51764504 - 51764625
Alignment:
Q  2 aaacactctatgtgatctcaaagtactttcgtgggcttttgcagctgtcactgcaatataatcaaaatgttacagagaagggagtgaaacacctggtgga 101  Q
    |||||||||||| |||||||||| | | | | ||||||||||| || | |||| || ||  | | ||||| |  |||||||||||||||||  |||| ||    
T  51764504 aaacactctatgcgatctcaaagaattgttgcgggcttttgcaactattactggaacattgtgataatgtcaaggagaagggagtgaaacatgtggttga 51764603  T
Q  102 aaactgcacacaactgagagaa 123  Q
    ||||||||||||| ||||||||    
T  51764604 aaactgcacacaattgagagaa 51764625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 153
Target Start/End: Original strand, 514863 - 514943
Alignment:
Q  73 acagagaagggagtgaaacacctggtggaaaactgcacacaactgagagaaatcaagttggagggttgttataaagtgcat 153  Q
    ||||||| ||||||||| ||  ||||| |||||||||||| ||||||||| ||||| ||    |||||| |||||||||||    
T  514863 acagagacgggagtgaagcatgtggtgaaaaactgcacacgactgagagagatcaatttaagaggttgtaataaagtgcat 514943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 118
Target Start/End: Complemental strand, 19632403 - 19632358
Alignment:
Q  73 acagagaagggagtgaaacacctggtggaaaactgcacacaactga 118  Q
    ||||||||||||||||||||| |||| |||||||||| ||||||||    
T  19632403 acagagaagggagtgaaacacgtggtagaaaactgcaaacaactga 19632358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 120
Target Start/End: Original strand, 6603332 - 6603384
Alignment:
Q  68 atgttacagagaagggagtgaaacacctggtggaaaactgcacacaactgaga 120  Q
    |||| |||||||| |||||||||||  |||| |||||||||| ||||||||||    
T  6603332 atgtcacagagaaaggagtgaaacatgtggtagaaaactgcaaacaactgaga 6603384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 123
Target Start/End: Complemental strand, 14818352 - 14818296
Alignment:
Q  67 aatgttacagagaagggagtgaaacacctggtggaaaactgcacacaactgagagaa 123  Q
    ||||| ||||||||||| ||||||||  | || |||||||||||||| |||||||||    
T  14818352 aatgtcacagagaagggtgtgaaacatgtagtagaaaactgcacacagctgagagaa 14818296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 801 times since January 2019
Visitors: 6035