View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_166 (Length: 205)
Name: NF0836_low_166
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_166 |
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Alignment Details
Target: chr7 (Bit Score: 169; Significance: 8e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 8e-91
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 47561340 - 47561168
Alignment:
| Q |
18 |
aaaatttgatacctactcatcatatcacatctattacaaatgtcatacactctccttagaactagacacctcagtatcttgcttcttctcttcgctaaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47561340 |
aaaatttgatacctactcatcatatcacatctattacaaatgtcatacactctccttagaactagacacctcagtatcttgcttcttctcttcgctaaca |
47561241 |
T |
|
| Q |
118 |
gcaattgatttttcagatggctcccctcctgaggaatctggttcctttttaagctcagactcaaactcctttg |
190 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
47561240 |
gcaattgatttttcagatggctcccctcctgaggaacctggttcctttttaagctcagactcaaactcctttg |
47561168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 107; Significance: 8e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 18 - 190
Target Start/End: Complemental strand, 38969421 - 38969252
Alignment:
| Q |
18 |
aaaatttgatacctactcatcatatcacatctattacaaatgtcatacactctccttagaactagacacctcagtatcttgcttcttctcttcgctaaca |
117 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| || |||||||||| ||||||||| ||| |
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| T |
38969421 |
aaaatttgatacctacttatcatatcacatctattacaaatgtcatacactctccttagaactagttacctctgtgtcttgcttctcctcttcgctcaca |
38969322 |
T |
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| Q |
118 |
gcaattgatttttcagatggctcccctcctgaggaatctggttcctttttaagctcagactcaaactcctttg |
190 |
Q |
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| | ||||| |||||||||||| |||||| ||||||||| || |||||||||||||||||||||||||||| |
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| T |
38969321 |
g---tagatttctcagatggctcctctcctgtggaatctgggtcatttttaagctcagactcaaactcctttg |
38969252 |
T |
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