View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_18 (Length: 604)
Name: NF0836_low_18
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 3 - 327
Target Start/End: Original strand, 46914063 - 46914387
Alignment:
| Q |
3 |
gatgtcgaataatatataagtgagaaaattcatatatctaattgtttaaagatttggttaagatgtaatgtctaatttatttgtgtaattgatcaaagct |
102 |
Q |
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| T |
46914063 |
gatgttgaacaatatataagtgagaaaattcatatatctaattgtttaaagatttggttaagatgtaatgtctaatctatttttgtaatcgatcaaagtt |
46914162 |
T |
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| Q |
103 |
agatgaaatgattcatgaacctaacaaacaatccaatagggagacacatttatattgttcaaaactaaatgtaatgatctccgaatcccctaagatccaa |
202 |
Q |
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| T |
46914163 |
cgatgaaatgattcatgaacctaacaaacaatccaatagggagacacatgtatattgttcaaaactaaatgtaatgatccccgaatcccctaagatccaa |
46914262 |
T |
|
| Q |
203 |
tagaaagacacgtgtatggcatagatgaatctacatatttaagagttattccaaatgcatgatgacaaagtcctttatgttcaatcaaacaagctgtcca |
302 |
Q |
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| T |
46914263 |
tagaaagacacgtgtatggcatagatgaatctacatatttaagagttattccaaatgcatgatgacaaagtcctttatgttcaatcaaacaagctgtcca |
46914362 |
T |
|
| Q |
303 |
gaggaatcataaatcaggtaagcaa |
327 |
Q |
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| T |
46914363 |
gaggaatcataaatcaggtaagcaa |
46914387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 369 - 575
Target Start/End: Original strand, 46914449 - 46914655
Alignment:
| Q |
369 |
cctgaataatggtcaaatactctctagctagcacatagcttcactactaccctgtgtaatagaatggaaccgtgcttgttgcactgggattttgtgcatc |
468 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
46914449 |
cctgaataatggtcaaatactctctagctagcacatagattcactactaccctgtgtaatagaatggaaccgtgcttgttgcactgggattttgtgtatc |
46914548 |
T |
|
| Q |
469 |
ggtttgttaaataacatgtacataacatattggaaaattctgttactcatagaacacagcatgatatatggtcagcaaaagcatgtttgtataaaccaag |
568 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
46914549 |
ggtttgttaaataacatgtacataacatattggaaaattctgttactcatagaacacagcatgatatatggtcagcaaaagcatgtttgtatataccaag |
46914648 |
T |
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| Q |
569 |
tagtaaa |
575 |
Q |
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||||||| |
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| T |
46914649 |
tagtaaa |
46914655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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