View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_22 (Length: 525)
Name: NF0836_low_22
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 434; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 9 - 497
Target Start/End: Complemental strand, 30077995 - 30077512
Alignment:
| Q |
9 |
agcagagacagcgcaactgttttaggacagaacaccacgtgttccatttgtttgtgtgagtacaaggattcggagatgctgaggatgatgcctgaatgtc |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30077995 |
agcagagacagcgcaactgttttaggacagaacaccacgtgttccatttgtttgtgtgagtacaaggattcggagatgctgaggatgatgcctgaatgtc |
30077896 |
T |
|
| Q |
109 |
gtcattactttcatctatgttgtcttgattcatggttgaagcttaatggctcttgtcccgtttgtcgaaactccccgcttccgacgccgctttctactcc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30077895 |
gtcattactttcatctatgttgtcttgattcatggttgaagcttaatggctcttgtcccgtttgtcgaaactccccgcttccgacgccgctttctactcc |
30077796 |
T |
|
| Q |
209 |
gcttcaagaggttgttccgctttcgcagtatgctgctgatcggagacggaggaggtgaattttctttttcctcgattagtataatttggagtttgattgc |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
30077795 |
gcttcaagaggttgttccgctttcgcagtatgctgctgatcggagacggaggaggtgaattttctttttcctcgattaggataatttggagtttgattgc |
30077696 |
T |
|
| Q |
309 |
gagataaatatagtcttgttgagaattattttagttagagatcaaactagggtaatattttaatgattaggtttaatatggggaagaatgatatttctat |
408 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30077695 |
gagataaatatagtc-tgttgagaattattttagttagagatcaaactagggtaatattttaatgattaggtttaatatggggaagaatgatatttctat |
30077597 |
T |
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| Q |
409 |
ttggttttatatatgcaagggaaatgggaaggnnnnnnnnttgttagtgttaggtgtttaattatatgtaatttttcatagggatgtgt |
497 |
Q |
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| T |
30077596 |
ttggttttatatatgcaag---aatgggaagg-aaaaaaattgttagtgttaggtgtttaattatatgtaatttttcatagggatgtgt |
30077512 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 72 - 173
Target Start/End: Complemental strand, 30084356 - 30084255
Alignment:
| Q |
72 |
aaggattcggagatgctgaggatgatgcctgaatgtcgtcattactttcatctatgttgtcttgattcatggttgaagcttaatggctcttgtcccgttt |
171 |
Q |
| |
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||||| |||||||| ||||||||||||| |||||| || || ||||||| | |||| ||||| ||||||||||| ||||||| || ||||| |||| |
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| T |
30084356 |
aaggaatcggagattttgaggatgatgccgcaatgtcaccactattttcatcgagattgtgttgatacatggttgaaggttaatggttcgtgtccagttt |
30084257 |
T |
|
| Q |
172 |
gt |
173 |
Q |
| |
|
|| |
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|
| T |
30084256 |
gt |
30084255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 85; Significance: 3e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 44 - 232
Target Start/End: Complemental strand, 10810351 - 10810163
Alignment:
| Q |
44 |
cacgtgttccatttgtttgtgtgagtacaaggattcggagatgctgaggatgatgcctgaatgtcgtcattactttcatctatgttgtcttgattcatgg |
143 |
Q |
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||||||||| || |||||||||||||||||||||||||||||| | ||||||||||| |||||| | || || ||||| ||||||||||||||||| ||| |
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| T |
10810351 |
cacgtgttcgatctgtttgtgtgagtacaaggattcggagatgttaaggatgatgccggaatgtagacactattttcacctatgttgtcttgattcgtgg |
10810252 |
T |
|
| Q |
144 |
ttgaagcttaatggctcttgtcccgtttgtcgaaactccccgcttccgacgccgctttctactccgcttcaagaggttgttccgctttc |
232 |
Q |
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||||| ||||| || ||||||||||||||||| ||||| || | || |||||| | ||||||||| | ||||| |||||||| ||||| |
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| T |
10810251 |
ttgaaacttaacggttcttgtcccgtttgtcggaactcacctatgccaacgccgttatctactccgttacaagaagttgttccactttc |
10810163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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