View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_low_23 (Length: 524)

Name: NF0836_low_23
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_low_23
NF0836_low_23
[»] chr8 (7 HSPs)
chr8 (27-515)||(27574456-27574946)
chr8 (382-461)||(8656394-8656473)
chr8 (386-478)||(40619728-40619820)
chr8 (382-449)||(8081333-8081400)
chr8 (376-479)||(35738417-35738521)
chr8 (382-478)||(41579910-41580006)
chr8 (382-478)||(31127268-31127364)
[»] chr2 (6 HSPs)
chr2 (36-312)||(25967118-25967396)
chr2 (95-312)||(32462463-32462687)
chr2 (382-461)||(33440984-33441063)
chr2 (113-222)||(15344623-15344736)
chr2 (383-461)||(33711177-33711255)
chr2 (383-441)||(16648927-16648985)
[»] chr5 (12 HSPs)
chr5 (123-312)||(32421551-32421743)
chr5 (382-477)||(20666549-20666645)
chr5 (394-479)||(25932153-25932238)
chr5 (382-477)||(16038916-16039011)
chr5 (394-479)||(20210062-20210147)
chr5 (382-478)||(32453047-32453142)
chr5 (389-461)||(12443589-12443661)
chr5 (382-473)||(1277285-1277376)
chr5 (388-461)||(977507-977580)
chr5 (388-489)||(15692392-15692493)
chr5 (382-462)||(32765236-32765316)
chr5 (382-471)||(6886432-6886521)
[»] chr4 (6 HSPs)
chr4 (376-489)||(24858995-24859108)
chr4 (392-489)||(35747096-35747193)
chr4 (382-477)||(15726871-15726966)
chr4 (381-461)||(25418504-25418584)
chr4 (379-461)||(37175976-37176058)
chr4 (388-426)||(24309394-24309432)
[»] chr1 (7 HSPs)
chr1 (382-477)||(7004668-7004763)
chr1 (27-312)||(14912979-14913266)
chr1 (382-478)||(22172866-22172962)
chr1 (382-470)||(16899306-16899394)
chr1 (126-234)||(25363770-25363881)
chr1 (382-478)||(11956335-11956431)
chr1 (382-478)||(24614736-24614832)
[»] chr3 (3 HSPs)
chr3 (388-476)||(13936192-13936280)
chr3 (382-473)||(32034363-32034454)
chr3 (383-489)||(8531065-8531166)
[»] chr7 (5 HSPs)
chr7 (390-461)||(23246550-23246621)
chr7 (138-280)||(36892391-36892536)
chr7 (382-461)||(42179715-42179794)
chr7 (382-441)||(6714265-6714324)
chr7 (382-478)||(27392584-27392680)
[»] chr6 (1 HSPs)
chr6 (405-460)||(10443452-10443507)


Alignment Details
Target: chr8 (Bit Score: 370; Significance: 0; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 27 - 515
Target Start/End: Original strand, 27574456 - 27574946
Alignment:
Q  27 ctcaaaatactttt-gttcggattatattaatccgaaccacatttgaattatataatctagattttcatgacccttttgtaacttggagcaccctaaagc 125  Q
    |||||||||||||| |||||||||||||||||||||| ||| |||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  27574456 ctcaaaatactttttgttcggattatattaatccgaatcacgtttggattatataatctcgattttcatgacccttttgtaacttggagcaccctaaagc 27574555  T
Q  126 atcttgaagttgaaatgcataagataggttcgaattatatacgaaaacatttaagtcagtttggattttaaaatccaaaacgtgtcaaaca-ccccatgg 224  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| | |||||||||||||| ||||||||    
T  27574556 atcttgaagttgaaatgcataagataggttcgaattatatacgaaaacatttaagccagtttggattttaaaatgcgaaacgtgtcaaacacccccatgg 27574655  T
Q  225 aaagtcaacagttggagggaagatagggtatttcgaattatataatctgaaatgtctaataaacaattcggattatataatccgaagtatgggtgtttaa 324  Q
    ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27574656 aaagtcaacagttggagggaaaatagggtatttcggattatataatctgaaatgtctaataaacaattcggattatataatccgaagtatgggtgtttaa 27574755  T
Q  325 atcaaaaccgatttaaatgaaaactgcaaaccgatccnnnnnnntcgatacccacataaaaccgaatattattggatgtgtttggatgacattttgtgaa 424  Q
    ||| ||||||||||||||||||||||||||| |||||       || | | ||  |||||||||||||||||||||||||||||||||||||||||||||    
T  27574756 atctaaaccgatttaaatgaaaactgcaaactgatccaaaaaaatcaaaaaccgtataaaaccgaatattattggatgtgtttggatgacattttgtgaa 27574855  T
Q  425 aaccgctcggattggataagattttggattgattttttcaaaccaaaccaaaccacatgcaaatacatatttccattgttgtaagtataat 515  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||| |||| |||||||||||||||||||||||||||    
T  27574856 aaccgctcggattggataagattttggattgatttttttaaaccaaaccaaatcgcatacaaaaacatatttccattgttgtaagtataat 27574946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 382 - 461
Target Start/End: Original strand, 8656394 - 8656473
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttt 461  Q
    |||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | ||||| |||| ||||||    
T  8656394 aaaatcgaatattattggatgtgtttggatgatattttgtgaaaaccgctcggattggatcatattttagattaattttt 8656473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 386 - 478
Target Start/End: Complemental strand, 40619820 - 40619728
Alignment:
Q  386 ccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaacc 478  Q
    ||||||| |||||||||||||||||||||||||| ||||||  |||||||||||||  ||||||||||||||||||  ||||| |||| ||||    
T  40619820 ccgaataatattggatgtgtttggatgacattttatgaaaattgctcggattggatcggattttggattgatttttcaaaaccgaaccgaacc 40619728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 382 - 449
Target Start/End: Original strand, 8081333 - 8081400
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagatttt 449  Q
    ||||| ||||||||||||| |||||||||||| |||||||||||||||||| ||||||||||||||||    
T  8081333 aaaacggaatattattggaagtgtttggatgatattttgtgaaaaccgctctgattggataagatttt 8081400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 376 - 479
Target Start/End: Complemental strand, 35738521 - 35738417
Alignment:
Q  376 ccacataaaaccgaatattattgga-tgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaacca 474  Q
    ||||| ||||||||||| ||||||| ||||||||||||||||||| |  |||||||||| ||| ||| |||||||||||||| ||||  |||||||| ||    
T  35738521 ccacacaaaaccgaataatattggaatgtgtttggatgacattttatataaaccgctcgaattagatgagattttggattgaattttcaaaaccaaatca 35738422  T
Q  475 aacca 479  Q
    |||||    
T  35738421 aacca 35738417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 382 - 478
Target Start/End: Original strand, 41579910 - 41580006
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaacc 478  Q
    |||||| |||| |||||| ||||||||||  ||||||| ||||||||||||||||||||| ||||||| |||||| ||||  |||||||||| ||||    
T  41579910 aaaacctaataatattggttgtgtttggaaaacattttatgaaaaccgctcggattggatcagatttttgattgaattttcaaaaccaaaccgaacc 41580006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 478
Target Start/End: Complemental strand, 31127364 - 31127268
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaacc 478  Q
    ||||||||||||| |||||||||||||||||   |||||  |||||||||  ||| ||||  ||||| ||||||  ||||  |||||||||| ||||    
T  31127364 aaaaccgaatatttttggatgtgtttggatgttgttttggaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccaaaccgaacc 31127268  T

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Target: chr2 (Bit Score: 111; Significance: 9e-56; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 36 - 312
Target Start/End: Complemental strand, 25967396 - 25967118
Alignment:
Q  36 cttttgttcggattatattaatccgaaccacatttgaattatataatctagattttcatgacccttttgtaacttggagcaccctaaagcatcttgaagt 135  Q
    |||||||||| ||||||| ||| |||||| |||||| |||||||||||   ||||| | ||||||| |||||| ||||||||| | ||| ||||||||||    
T  25967396 cttttgttcgaattatat-aattcgaaccgcatttggattatataatcataatttttacgacccttctgtaacatggagcaccttgaaggatcttgaagt 25967298  T
Q  136 tgaaatgcataagataggttcgaattatata---cgaaaacatttaagtcagtttggattttaaaatccaaaacgtgtcaaacaccc-catggaaagtca 231  Q
    |||| | |||||  |||||||||||||||||   |||||| ||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  25967297 tgaagtacataaattaggttcgaattatataatccgaaaaaatttaag-cagtttggataataaaatccaaaacgtgtcaaacaccctcatggaaagtca 25967199  T
Q  232 acagttggagggaagatagggtatttcgaattatataatctgaaatgtctaataaacaattcggattatataatccgaagt 312  Q
    ||| |||||||||| |  |||| ||||| ||| ||||||| |||||||||||||||| |||  |||||||||||| |||||    
T  25967198 acaattggagggaaaaaggggtgtttcggattttataatccgaaatgtctaataaacgattgagattatataatcagaagt 25967118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 95 - 312
Target Start/End: Original strand, 32462463 - 32462687
Alignment:
Q  95 gacccttttgtaacttggagcaccctaaagcatcttgaagttgaaatgcataagataggttcgaattatata-------cgaaaacatttaagtcagttt 187  Q
    ||||||||| |||| || |||||||| ||| ||||||| | | || |||||| ||| |||||| ||||||||       ||||||||||| || | |||     
T  32462463 gacccttttctaacctgaagcaccctgaaggatcttgatgctaaagtgcataggattggttcggattatataattaatccgaaaacattttagcctgttc 32462562  T
Q  188 ggattttaaaatccaaaacgtgtcaaacaccccatggaaagtcaacagttggagggaagatagggtatttcgaattatataatctgaaatgtctaataaa 287  Q
    ||||| || ||||   |||||||||||||||||||| |||||||||   ||||||||| |  |||| ||||  ||||||||||| ||||||| |||||||    
T  32462563 ggattatataatctgtaacgtgtcaaacaccccatgaaaagtcaaccaatggagggaaaaaggggtgtttctgattatataatccgaaatgtataataaa 32462662  T
Q  288 caattcggattatataatccgaagt 312  Q
    ||||| |||||| ||||||||||||    
T  32462663 caatttggattacataatccgaagt 32462687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 382 - 461
Target Start/End: Original strand, 33440984 - 33441063
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttt 461  Q
    |||||||||||||||||||||||||||||||| |||||| | |||||| | |||||| ||  ||||||||||||||||||    
T  33440984 aaaaccgaatattattggatgtgtttggatgatattttgcgtaaaccgtttggattgcatcggattttggattgattttt 33441063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 222
Target Start/End: Complemental strand, 15344736 - 15344623
Alignment:
Q  113 agcaccctaaagcatcttgaagttgaaatgcataagataggttcgaattatata--cgaaaac-atttaagtcag-tttggattttaaaatccaaaacgt 208  Q
    |||||| | ||| |||| |||| |||| |||||| |||||||||||||||||||  | ||||| |||| ||| || |||||||| |||||||| ||| ||    
T  15344736 agcaccttgaaggatctcgaagctgaagtgcataggataggttcgaattatataatccaaaacaattttagttagttttggattataaaatccgaaatgt 15344637  T
Q  209 gtcaaacaccccat 222  Q
    ||||||||||||||    
T  15344636 gtcaaacaccccat 15344623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 383 - 461
Target Start/End: Original strand, 33711177 - 33711255
Alignment:
Q  383 aaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttt 461  Q
    ||||||||||||||| ||||||||||| || |||||| ||||||| | | |||||| ||  | ||||||||||||||||    
T  33711177 aaaccgaatattatttgatgtgtttggttgccattttatgaaaactgtttggattgaatcgggttttggattgattttt 33711255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 383 - 441
Target Start/End: Original strand, 16648927 - 16648985
Alignment:
Q  383 aaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggat 441  Q
    |||| ||||||||||| |||||||||||| ||||||||| ||||||  | |||||||||    
T  16648927 aaactgaatattattgaatgtgtttggataacattttgtaaaaaccatttggattggat 16648985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 6e-32; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 123 - 312
Target Start/End: Complemental strand, 32421743 - 32421551
Alignment:
Q  123 agcatcttgaagttgaaatgcataagataggttcgaattatatac---gaaaacatttaagtcagtttggattttaaaatccaaaacgtgtcaaacaccc 219  Q
    |||| ||||||| |||| ||||||||||| ||||| ||||||||    |||||| | |||| ||||||||||| || |||| |||||| ||||||||| |    
T  32421743 agcaccttgaagctgaactgcataagatatgttcggattatataatctgaaaacttgtaagccagtttggattatataatctaaaacgagtcaaacactc 32421644  T
Q  220 catggaaagtcaacagttggagggaagatagggtatttcgaattatataatctgaaatgtctaataaacaattcggattatataatccgaagt 312  Q
     |||||||||||||| || ||||||| ||  ||| ||||||||||||||||||||||||| ||| || || ||||||||||| |||| |||||    
T  32421643 gatggaaagtcaacaatttgagggaaaatgtggtgtttcgaattatataatctgaaatgtgtaaaaatcatttcggattatacaatctgaagt 32421551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 382 - 477
Target Start/End: Original strand, 20666549 - 20666645
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtg-aaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaac 477  Q
    ||||||||||||||||||||||||||||||||||||||||| |||| ||||| || ||||| |||||||||||||||||||  ||||| ||||||||    
T  20666549 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaatcgctcagactggatcagattttggattgatttttcaaaaccgaaccaaac 20666645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 394 - 479
Target Start/End: Original strand, 25932153 - 25932238
Alignment:
Q  394 tattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaacca 479  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||  ||||||||||||| ||||  ||||||||||||||||    
T  25932153 tattggatgtgtttggataacattttatgaaaaccgctcggattggatcggattttggattgaattttcaaaaccaaaccaaacca 25932238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 382 - 477
Target Start/End: Complemental strand, 16039011 - 16038916
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaac 477  Q
    ||||||||||| |||| ||||||||||||||||||||| | |||| | |||| |||| ||  ||||||||||||| ||||| ||||||||||||||    
T  16039011 aaaaccgaataatatttgatgtgtttggatgacattttataaaaatcactcgaattgaattggattttggattgactttttaaaaccaaaccaaac 16038916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 394 - 479
Target Start/End: Complemental strand, 20210147 - 20210062
Alignment:
Q  394 tattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaacca 479  Q
    ||||||| |||||||||||| ||||| |||||||||||| ||||||||   |||||||||||| ||||  ||||||||||||||||    
T  20210147 tattggacgtgtttggatgatattttatgaaaaccgctcagattggatcgtattttggattgaattttcaaaaccaaaccaaacca 20210062  T

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Target: chr5; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 478
Target Start/End: Original strand, 32453047 - 32453142
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaacc 478  Q
    ||||| ||||| ||||| |||||||||||||||||||| |||||| |||||||||| |||   |||||||||||| ||||  |||||||||||||||    
T  32453047 aaaactgaataatattgaatgtgtttggatgacattttatgaaaatcgctcggattagatcgtattttggattga-ttttcaaaaccaaaccaaacc 32453142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 389 - 461
Target Start/End: Original strand, 12443589 - 12443661
Alignment:
Q  389 aatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttt 461  Q
    |||||||||||||| ||||||||| |||||||| |||||||||| |||| |||   |||||||||||||||||    
T  12443589 aatattattggatgagtttggatgccattttgttaaaaccgctctgattagattgaattttggattgattttt 12443661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 473
Target Start/End: Original strand, 1277285 - 1277376
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaacc 473  Q
    |||||| ||||||||| ||| || ||||||||||||||| |||||||| || ||||| ||  ||||||||||| ||||||  ||||||||||    
T  1277285 aaaaccaaatattattagatttgattggatgacattttgagaaaaccgttcagattgaatcggattttggattaatttttcaaaaccaaacc 1277376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 461
Target Start/End: Original strand, 977507 - 977580
Alignment:
Q  388 gaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttt 461  Q
    |||||||||||||||| |||| |||  ||||||||||||| ||||| |||||||   |||||||||||||||||    
T  977507 gaatattattggatgtttttgaatgctattttgtgaaaactgctcgtattggatcgaattttggattgattttt 977580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 388 - 489
Target Start/End: Complemental strand, 15692493 - 15692392
Alignment:
Q  388 gaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaaccacatgcaaa 487  Q
    ||||||||||||||||| |||||||| |||||  |||||||| |  |||||||   ||||||||||||||||||  ||||  ||| ||||||||| ||||    
T  15692493 gaatattattggatgtgcttggatgatattttacgaaaaccgttaagattggaatggattttggattgatttttcaaaactgaacaaaaccacatacaaa 15692394  T
Q  488 ta 489  Q
    ||    
T  15692393 ta 15692392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 382 - 462
Target Start/End: Complemental strand, 32765316 - 32765236
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgatttttt 462  Q
    |||| |||||||||||| |||||||| |||||| || ||| ||||||| | ||||| |||  ||||||||||||| |||||    
T  32765316 aaaatcgaatattattgaatgtgtttagatgacgttatgtaaaaaccgtttggattagatcggattttggattgaattttt 32765236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 382 - 471
Target Start/End: Original strand, 6886432 - 6886521
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaa 471  Q
    |||| ||||||||||||||||   || |||  ||||||||||||||| ||||||||||||  ||||||  ||| ||| ||| ||||||||    
T  6886432 aaaatcgaatattattggatgaacttagatatcattttgtgaaaaccactcggattggatcggattttatatttattatttaaaaccaaa 6886521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 376 - 489
Target Start/End: Original strand, 24858995 - 24859108
Alignment:
Q  376 ccacataaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaa 475  Q
    ||||| |||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||  ||||||||||||||||||  ||||| |||| |    
T  24858995 ccacacaaaatcgaatattattggatgtgtttggatgacattttgtgaaaaccgtttggattggatcggattttggattgatttttcaaaaccgaaccga 24859094  T
Q  476 accacatgcaaata 489  Q
    ||| ||| ||||||    
T  24859095 accgcatacaaata 24859108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 392 - 489
Target Start/End: Original strand, 35747096 - 35747193
Alignment:
Q  392 attattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaaccacatgcaaata 489  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||  |||||||||| |||||||  | ||| ||||||||| ||| ||||||    
T  35747096 attattggatgtgtttggatgacattttgtgaaaaccactcggattggatcggattttggatagatttttcaataccgaaccaaaccgcatacaaata 35747193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 382 - 477
Target Start/End: Complemental strand, 15726966 - 15726871
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaac 477  Q
    |||||| ||||||||||||||||||||||||| ||||||| |||| ||||||||  |||| ||||||||| |||||||||  ||||||||||||||    
T  15726966 aaaaccaaatattattggatgtgtttggatgatattttgtaaaaatcgctcggacaggatcagattttggtttgatttttcaaaaccaaaccaaac 15726871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 381 - 461
Target Start/End: Complemental strand, 25418584 - 25418504
Alignment:
Q  381 taaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttt 461  Q
    ||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||||||  ||  ||||||||||||||||||    
T  25418584 taaaatcgaatattattggatctgtttggatgatattttgtgaaaacccctcggattaaatccgattttggattgattttt 25418504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 379 - 461
Target Start/End: Complemental strand, 37176058 - 37175976
Alignment:
Q  379 cataaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttt 461  Q
    |||||||| |||||| ||||||||| |||||||| || |||||||||||| || | ||||||| ||||||||||| |||||||    
T  37176058 cataaaactgaatatcattggatgtatttggatgccactttgtgaaaacctcttgtattggatcagattttggatcgattttt 37175976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 388 - 426
Target Start/End: Original strand, 24309394 - 24309432
Alignment:
Q  388 gaatattattggatgtgtttggatgacattttgtgaaaa 426  Q
    ||||||||||  |||||||||||||||||||||||||||    
T  24309394 gaatattattaaatgtgtttggatgacattttgtgaaaa 24309432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 1e-27; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 382 - 477
Target Start/End: Original strand, 7004668 - 7004763
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaac 477  Q
    |||| |||||||||||||||||||||| |||||||||||||||||||||| |||||||||  ||||||||||||||||||  ||||| ||||||||    
T  7004668 aaaatcgaatattattggatgtgtttgaatgacattttgtgaaaaccgcttggattggatcggattttggattgatttttcaaaaccgaaccaaac 7004763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 27 - 312
Target Start/End: Complemental strand, 14913266 - 14912979
Alignment:
Q  27 ctcaaaatac-ttttgttcggattatattaatccgaaccacatttgaattatataatctagattttcatgacccttttgtaacttggagcaccctaaagc 125  Q
    |||||||||| ||||||||||||||||| ||||||||| |  |||| ||||||||||| | |  || |  ||||||||||| || | | ||||||  ||     
T  14913266 ctcaaaataccttttgttcggattatat-aatccgaactaagtttggattatataatccaaaactttacaacccttttgtacct-gaatcaccctggagg 14913169  T
Q  126 atcttgaagttgaaatgcataagataggttcgaattatatac---gaaaacatttaagtcagtttggattttaaaatccaaaacgtgtcaaacaccccat 222  Q
    ||||||| |||||| ||  || |||||||||||||||||||    |||    ||| || |||||||||||  | |||   ||||||||||||||| ||||    
T  14913168 atcttgatgttgaagtgtttaggataggttcgaattatataatctgaatttgttttaggcagtttggattacataatttgaaacgtgtcaaacacaccat 14913069  T
Q  223 ggaaagtcaacagttggagggaagatagggtatttcgaattatataatctgaaatgtctaataaacaattcggattatataatccgaagt 312  Q
    | |||||||| | |||||||||| || |||| ||||| |||| ||||| |||||||||||||||||| ||||||||||| ||||||||||    
T  14913068 gaaaagtcaaaaattggagggaacatggggtgtttcggattaaataatatgaaatgtctaataaacatttcggattatacaatccgaagt 14912979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 382 - 478
Target Start/End: Original strand, 22172866 - 22172962
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaacc 478  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||||||| |||||| || |||||||||||||||||||  ||||  |||||||||    
T  22172866 aaaaccgaatattattggatgtgtttggatgacactttgtaaaaaccgcttggattgaatcagattttggattgatttttcaaaactgaaccaaacc 22172962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 382 - 470
Target Start/End: Complemental strand, 16899394 - 16899306
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaa 470  Q
    |||||| |||| ||||||||||||||||||||||||||  ||||||||||||||||||||   |||||||||||| ||||  |||||||    
T  16899394 aaaacctaataatattggatgtgtttggatgacattttaagaaaaccgctcggattggatcgaattttggattgaattttcaaaaccaa 16899306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 126 - 234
Target Start/End: Original strand, 25363770 - 25363881
Alignment:
Q  126 atcttgaagttgaaatgcataagataggttcgaattatata---cgaaaacatttaagtcagtttggattttaaaatccaaaacgtgtcaaacaccccat 222  Q
    |||||||||||||| |||||||||||||||||  |||||||   | | ||||| |||| ||||||||||| || ||||| |||||||||||||| |||||    
T  25363770 atcttgaagttgaagtgcataagataggttcggcttatataattcaataacatgtaagccagtttggattatataatccgaaacgtgtcaaacatcccat 25363869  T
Q  223 ggaaagtcaaca 234  Q
    | |||| |||||    
T  25363870 gaaaagccaaca 25363881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 382 - 478
Target Start/End: Complemental strand, 11956431 - 11956335
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaacc 478  Q
    |||| |||||| ||||| |||||||||||||||||||| ||| ||||||||  |||||||  ||||||||||||||||||  ||||| |||| ||||    
T  11956431 aaaatcgaataatattgaatgtgtttggatgacattttatgagaaccgctcaaattggatcggattttggattgatttttcaaaaccgaaccgaacc 11956335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 478
Target Start/End: Original strand, 24614736 - 24614832
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaacc 478  Q
    |||| |||||||  |||||||  |||||||| | |||||| |||||||||  ||| |||| |||||||||||   |||||| ||||| |||||||||    
T  24614736 aaaatcgaatatatttggatgcttttggatgtcgttttgtaaaaaccgctaagatcggatcagattttggatcacttttttaaaaccgaaccaaacc 24614832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 388 - 476
Target Start/End: Original strand, 13936192 - 13936280
Alignment:
Q  388 gaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaa 476  Q
    |||||||||||||||| ||||||||||||||||||||||| ||| |||||||||  ||||||||||||||||||  |||||||||||||    
T  13936192 gaatattattggatgtctttggatgacattttgtgaaaactgcttggattggatcggattttggattgatttttcaaaaccaaaccaaa 13936280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 382 - 473
Target Start/End: Complemental strand, 32034454 - 32034363
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaacc 473  Q
    ||||| ||||| |||||||||||||| ||||||||||| ||||||||||||||||||||| |||||||||||||| ||||  ||||||||||    
T  32034454 aaaactgaataatattggatgtgtttagatgacattttatgaaaaccgctcggattggatcagattttggattgaattttcaaaaccaaacc 32034363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 383 - 489
Target Start/End: Complemental strand, 8531166 - 8531065
Alignment:
Q  383 aaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaaccacat 482  Q
    |||| |||||| ||||||||||||||||||| ||||||||||||| ||| ||||||     ||||||||||||||||||| ||||| || | |||| |||    
T  8531166 aaactgaatataattggatgtgtttggatgatattttgtgaaaactgcttggattg-----gattttggattgattttttaaaaccgaaacgaaccgcat 8531072  T
Q  483 gcaaata 489  Q
     ||||||    
T  8531071 acaaata 8531065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 3e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 390 - 461
Target Start/End: Complemental strand, 23246621 - 23246550
Alignment:
Q  390 atattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttt 461  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||||  || |||| ||||||||||    
T  23246621 atattattggatatgtttggatgacattttatgaaaaccgctcggattggatcggactttgaattgattttt 23246550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 138 - 280
Target Start/End: Complemental strand, 36892536 - 36892391
Alignment:
Q  138 aaatgcataagataggttcgaattatata---cgaaaacatttaagtcagtttggattttaaaatccaaaacgtgtcaaacac-cccatggaaagtcaac 233  Q
    |||||||  ||||||||||||| ||||||   |||| |  |||||| || |||||||| |||||||||||||||||||||||| |||||| |||||||||    
T  36892536 aaatgcacgagataggttcgaactatatattccgaacaattttaagccaatttggattataaaatccaaaacgtgtcaaacacacccatgaaaagtcaac 36892437  T
Q  234 agttggagggaagatagggtatttcgaattatataatctgaaatgtc 280  Q
    | || ||| ||| |||| || ||||| |||||||||||  |||||||    
T  36892436 aatttgagagaaaatagagtgtttcg-attatataatccaaaatgtc 36892391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 461
Target Start/End: Complemental strand, 42179794 - 42179715
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttt 461  Q
    ||||||||||||||||| |||| |||  ||||||||||||||||||||  || |||||||  ||||||| ||||||||||    
T  42179794 aaaaccgaatattattgaatgtttttaaatgacattttgtgaaaaccgtccgaattggatcggattttgaattgattttt 42179715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 382 - 441
Target Start/End: Complemental strand, 6714324 - 6714265
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggat 441  Q
    ||||||||||||  |||||||||||||||||  ||||||| ||||||||| |||| ||||    
T  6714324 aaaaccgaatatatttggatgtgtttggatgttattttgtaaaaaccgctaggatcggat 6714265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 382 - 478
Target Start/End: Original strand, 27392584 - 27392680
Alignment:
Q  382 aaaaccgaatattattggatgtgtttggatgacattttgtgaaaaccgctcggattggataagattttggattgattttttcaaaccaaaccaaacc 478  Q
    ||||||||||||| |||||||||||||||||   |||||  |||||||||  ||| ||||  ||||| ||||||  ||||  |||||||||| ||||    
T  27392584 aaaaccgaatatttttggatgtgtttggatgttgttttgaaaaaaccgctatgatcggatcggatttcggattgcgttttcaaaaccaaaccgaacc 27392680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 405 - 460
Target Start/End: Original strand, 10443452 - 10443507
Alignment:
Q  405 tttggatgacattttgtgaaaaccgctcggattggataagattttggattgatttt 460  Q
    ||||||||||||||| ||||||||  ||||||||||| ||||||||||||||||||    
T  10443452 tttggatgacattttatgaaaaccattcggattggatcagattttggattgatttt 10443507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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