View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_25 (Length: 517)
Name: NF0836_low_25
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_25 |
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Alignment Details
Target: chr8 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 289 - 505
Target Start/End: Complemental strand, 34223353 - 34223137
Alignment:
| Q |
289 |
aagagaacattgcattgcatatggtgtatgcatgagacaggctgtgggaaattcgctttgagagcactatcacaatgccttgctagagaatttcagcctc |
388 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34223353 |
aagagaacatgccattgcatatggtgtatgcatgagacaggctgtgggaaattcgctttgagagcactatcacaatgccttgctagagaatttcagcctc |
34223254 |
T |
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| Q |
389 |
aaggagtgcatgtagctcatattattatcgatggttttattggcccaccaaggtgcgtttcgtttgtttatttgttcctagatcttctttcccttctctt |
488 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
34223253 |
aaggagtgcatgtagctcatattattatcgatggttttattggcccaccaaggtgcgtttcgtttgtttatttgttcctagatcttctttcccttttctt |
34223154 |
T |
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| Q |
489 |
ttcctttcattcatatt |
505 |
Q |
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||||||||||||||||| |
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| T |
34223153 |
ttcctttcattcatatt |
34223137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 28 - 207
Target Start/End: Complemental strand, 34223613 - 34223435
Alignment:
| Q |
28 |
agttcgtctgctctgcgatccaacatatcaaatgtttctatgaagctaaataataatttatgaattaggtgctgccgggaatggttgaaagaggaaaggg |
127 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
34223613 |
agttcgtctactctgcgatccaacatatcaaatgtttctatgaagctaaataatgatt-atgaattaggtgctgccgggaatggttgaaagaggaaaggg |
34223515 |
T |
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| Q |
128 |
aacaattctattcactggttgctctgcttctttaaatggcattgctggatactctgaactatgtatgtaaatactataca |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34223514 |
aacaattctattcactggttgctctgcttctttaaatggcattgctggatactctgaactatgtatgtaaatactataca |
34223435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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