View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_28 (Length: 498)
Name: NF0836_low_28
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_28 |
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Alignment Details
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 350
Target Start/End: Complemental strand, 16471344 - 16471010
Alignment:
| Q |
16 |
atcaatggagtatatgttggtgacctagatcaacagattggtgagtatgaggaacttgcgaagctccaatttcagttccatgaaagcacaactagactag |
115 |
Q |
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| T |
16471344 |
atcaatggagtatatgttggagacctagatcaacagattggtaagtatgaggaacttgcgaagctccaatttcagttccatgaaagcacaactaaactta |
16471245 |
T |
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| Q |
116 |
tagatttaaacaactataaggcaactgttaaacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgcttgtcaccagatatgctttcaca |
215 |
Q |
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| T |
16471244 |
tagatttgaacaactataaagcaactgttaaacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgcttgtcacctgatatgctttcaca |
16471145 |
T |
|
| Q |
216 |
tttagagaactcatcagacaataagaattttaagctaaccnnnnnnnnnnnnnnnnnnnnnnngttgtttctattttaagctaattaatgtactagtttt |
315 |
Q |
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| T |
16471144 |
tttagagaactcatcagacaataagaattttaagctaaccaaaaagaagaaaaagaaaaaaaagttgtttctattttaagctaattaatgtactagtttt |
16471045 |
T |
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| Q |
316 |
ctgaggaatcaattgtcaattgtgactattagtgg |
350 |
Q |
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| T |
16471044 |
ctgaggaatcaattgtcaattgtgactattggtgg |
16471010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 16 - 245
Target Start/End: Complemental strand, 16464322 - 16464093
Alignment:
| Q |
16 |
atcaatggagtatatgttggtgacctagatcaacagattggtgagtatgaggaacttgcgaagctccaatttcagttccatgaaagcacaactagactag |
115 |
Q |
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| T |
16464322 |
atcaatggagtatatgttggagacctagatcaacagattggtaagtatgaggaacttgcgaagctccaatttcagttccatgaaagcacaactagacttg |
16464223 |
T |
|
| Q |
116 |
tagatttaaacaactataaggcaactgttaaacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgcttgtcaccagatatgctttcaca |
215 |
Q |
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| T |
16464222 |
tagatttgaacaactataatgcaactgttaaacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgcttgtcaccagatatgctttcaca |
16464123 |
T |
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| Q |
216 |
tttagagaactcatcagacaataagaattt |
245 |
Q |
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| T |
16464122 |
tttagagaactcatcaaacaataataattt |
16464093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 16 - 228
Target Start/End: Complemental strand, 16493816 - 16493604
Alignment:
| Q |
16 |
atcaatggagtatatgttggtgacctagatcaacagattggtgagtatgaggaacttgcgaagctccaatttcagttccatgaaagcacaactagacta- |
114 |
Q |
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| T |
16493816 |
atcaatcgagtatatgttggtgacctagatcaccaaattgctaagtatgaggaacttgcaaagctacaatatcaattctttgtaagcaca-ctgaacacc |
16493718 |
T |
|
| Q |
115 |
gtagatttaaacaactataaggcaactgttaaacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgcttgtcaccagatatgctttcac |
214 |
Q |
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| T |
16493717 |
gttgatttgaacaagcataacgcaactgttgcacgcatcacagaacttaaaatggagagaagtcttcgtctgcttcgattgtcatctgatatgctttcag |
16493618 |
T |
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| Q |
215 |
atttagagaactca |
228 |
Q |
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| T |
16493617 |
atttagagaactca |
16493604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 23 - 192
Target Start/End: Complemental strand, 16499188 - 16499019
Alignment:
| Q |
23 |
gagtatatgttggtgacctagatcaacagattggtgagtatgaggaacttgcgaagctccaatttcagttccatgaaagcacaactagacta-gtagatt |
121 |
Q |
| |
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|||| |||||||||||| |||||||| | |||| |||||||||||||||||||||| |||| ||| ||| || |||||| || || || |||| |
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| T |
16499188 |
gagtttatgttggtgacttagatcaaaaaattgcaaagtatgaggaacttgcgaagctacaatatcaattctttgtgagcaca-ctgaacaccgttgatt |
16499090 |
T |
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| Q |
122 |
taaacaactataaggcaactgttaaacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgc |
192 |
Q |
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| T |
16499089 |
tgaacaaacataacgcaactgttgcacgtatcacagaacttaaaatggagagaagtcttcgtttgcttcgc |
16499019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 279 - 324
Target Start/End: Complemental strand, 16464056 - 16464011
Alignment:
| Q |
279 |
gttgtttctattttaagctaattaatgtactagttttctgaggaat |
324 |
Q |
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| T |
16464056 |
gttgtttctattttaagctaattaatgtactagttttctgaggaat |
16464011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 69
Target Start/End: Complemental strand, 44950254 - 44950209
Alignment:
| Q |
24 |
agtatatgttggtgacctagatcaacagattggtgagtatgaggaa |
69 |
Q |
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| T |
44950254 |
agtatatgttggtgacctagatcaacagattggtaagtattaggaa |
44950209 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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