View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_low_3 (Length: 795)

Name: NF0836_low_3
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_low_3
NF0836_low_3
[»] chr3 (5 HSPs)
chr3 (59-787)||(26438713-26439446)
chr3 (687-728)||(47783108-47783149)
chr3 (688-728)||(32221509-32221549)
chr3 (688-724)||(46733048-46733084)
chr3 (691-728)||(11256559-11256596)
[»] chr5 (3 HSPs)
chr5 (688-728)||(17858199-17858239)
chr5 (691-727)||(9530947-9530983)
chr5 (689-728)||(20185352-20185391)
[»] chr4 (3 HSPs)
chr4 (688-769)||(8257979-8258059)
chr4 (688-769)||(8271397-8271477)
chr4 (692-725)||(5496893-5496926)
[»] chr2 (7 HSPs)
chr2 (688-725)||(2884287-2884324)
chr2 (688-728)||(31469102-31469142)
chr2 (688-728)||(35693949-35693989)
chr2 (663-728)||(38935402-38935469)
chr2 (688-728)||(43398877-43398917)
chr2 (688-727)||(17437166-17437205)
chr2 (688-721)||(10459297-10459330)
[»] chr8 (3 HSPs)
chr8 (688-728)||(13209995-13210035)
chr8 (688-728)||(33557814-33557854)
chr8 (665-728)||(29110998-29111063)
[»] chr7 (2 HSPs)
chr7 (688-728)||(44816498-44816538)
chr7 (688-727)||(32652446-32652485)
[»] chr6 (1 HSPs)
chr6 (688-728)||(8437813-8437853)
[»] chr1 (4 HSPs)
chr1 (688-728)||(3694026-3694066)
chr1 (688-728)||(5056333-5056373)
chr1 (688-728)||(30693366-30693406)
chr1 (688-728)||(47543630-47543670)
[»] scaffold0067 (1 HSPs)
scaffold0067 (693-728)||(35976-36011)
[»] scaffold0009 (1 HSPs)
scaffold0009 (687-728)||(51260-51301)


Alignment Details
Target: chr3 (Bit Score: 576; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 59 - 787
Target Start/End: Original strand, 26438713 - 26439446
Alignment:
Q  59 tgtagcgtgctaaataagatatatacaacataaatgttaacgaaactatagaaattttaatttaccaaattacccaatcatatgacaacaaattattgga 158  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26438713 tgtagcgtgctaaataagatatatacaacataaatgttaaagaaactatggaaattttaatttaccaaattacccaatcatatgacaacaaattattgga 26438812  T
Q  159 gctactaatcactattattaaataatcatgattataaaattattgactcatttatgttctataaataatatatttaaggtgtgacnnnnnnnnngtgtga 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||         ||||||    
T  26438813 gctactaatcactattattaaataatcatgattataaaattattgactcatttatgttctatgaataatatatttaaggtgtgactttttttttgtgtga 26438912  T
Q  259 atagagtatccttgcgtaaaactacggagactaatcattatgttagaaaagattgtatttggtagtaaaatccttactctaaatatttaacattccagca 358  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26438913 atagagtatccttgcgcaaaactactgagactaatcattatgttagaaaggattgtatttggtagtaaaacccttactctaaatatttaacattccagca 26439012  T
Q  359 ttttaatggttgaatttgaactaaatatctttgattacactagaagagatatcttaatatctcatctaaatggtctagagtacttacggtgtatctttgg 458  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  26439013 ttttaatggttgaatttgaactaaatatctttgattacactataagagatatcttaatatctcatctaaatgctctagagtacttacagtgtatctttgg 26439112  T
Q  459 tttgtagaaaattaatgattgacaatatatata-----acttgtatattatttgatttaaaaattaatcatgaggctnnnnnnnnttagtggtaagagat 553  Q
    |||||||||||||||||||||| ||||||||||     ||||||||| |||||||||||||||||||||||||||||        |||||||||||||||    
T  26439113 tttgtagaaaattaatgattgataatatatataactttacttgtatagtatttgatttaaaaattaatcatgaggctaaaaaaaattagtggtaagagat 26439212  T
Q  554 tgaatacaaaattatatttgtctttcattaaaccatgagatatatacaagctatccaaaataacaaaatacattttattttatactaagaaaatattttt 653  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26439213 tgaatacaaaattatatttgtctttcattaaaccatgagatatatacaagctatccaaaataacaaaatactttttattttatactaagaaaatattttt 26439312  T
Q  654 cccccttttcaaaaatataaacaaatattaacc-aaaaaattaatgtatttggttcaaaatttgtatcaaatacatgttgacccatttttctttacattt 752  Q
     ||||||||| ||||||||| ||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  26439313 tccccttttc-aaaatataagcaaatattagccaaaaaaattaatgtatttgattcaaaatttgtatcaaatacatgttgacccatttttctttatattt 26439411  T
Q  753 tgggacgaagggagtatatatgtataattcatctc 787  Q
    |||||||||||||||||||||||||||||||||||    
T  26439412 tgggacgaagggagtatatatgtataattcatctc 26439446  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 687 - 728
Target Start/End: Original strand, 47783108 - 47783149
Alignment:
Q  687 aaaaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  47783108 aaaaagttaatgtatttggttcaaaatttgtatcagatacat 47783149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 728
Target Start/End: Complemental strand, 32221549 - 32221509
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  32221549 aaaagttaatgtatttggttcaaaatttgtaccaaatacat 32221509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 724
Target Start/End: Original strand, 46733048 - 46733084
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaat 724  Q
    ||||||||||||||||| |||||||||||||||||||    
T  46733048 aaaaattaatgtatttgattcaaaatttgtatcaaat 46733084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 728
Target Start/End: Original strand, 11256559 - 11256596
Alignment:
Q  691 aattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    |||||||||||||| | |||||||||||||||||||||    
T  11256559 aattaatgtatttgatccaaaatttgtatcaaatacat 11256596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 688 - 728
Target Start/End: Original strand, 17858199 - 17858239
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  17858199 aaaaattaatgtatttggttcaaaatttgtatcagatacat 17858239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 691 - 727
Target Start/End: Original strand, 9530947 - 9530983
Alignment:
Q  691 aattaatgtatttggttcaaaatttgtatcaaataca 727  Q
    ||||||||||||||||||||||||| |||||||||||    
T  9530947 aattaatgtatttggttcaaaatttatatcaaataca 9530983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 689 - 728
Target Start/End: Complemental strand, 20185391 - 20185352
Alignment:
Q  689 aaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  20185391 aaaattaatgtatttggttcaaaatttgtacaaaatacat 20185352  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 769
Target Start/End: Original strand, 8257979 - 8258059
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaatacatgttgacccatttttctttacattttgggacgaagggagtat 769  Q
    |||| ||||||||||||||||||||||| |||| | |  ||||||||  |||||| |||| ||||||||||| |||||||||    
T  8257979 aaaagttaatgtatttggttcaaaatttatatcgact-tatgttgacatatttttgtttatattttgggacggagggagtat 8258059  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 769
Target Start/End: Original strand, 8271397 - 8271477
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaatacatgttgacccatttttctttacattttgggacgaagggagtat 769  Q
    |||| ||||||||||||||||||||||| |||| | |  ||||||||  |||||| |||| ||||||||||| |||||||||    
T  8271397 aaaagttaatgtatttggttcaaaatttatatcgact-tatgttgacatatttttgtttatattttgggacggagggagtat 8271477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 692 - 725
Target Start/End: Complemental strand, 5496926 - 5496893
Alignment:
Q  692 attaatgtatttggttcaaaatttgtatcaaata 725  Q
    ||||||||||||||||||||||||||| ||||||    
T  5496926 attaatgtatttggttcaaaatttgtaccaaata 5496893  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 688 - 725
Target Start/End: Original strand, 2884287 - 2884324
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaata 725  Q
    |||||||||||||||||||||||||||| |||||||||    
T  2884287 aaaaattaatgtatttggttcaaaatttatatcaaata 2884324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 728
Target Start/End: Original strand, 31469102 - 31469142
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  31469102 aaaagttaatgtatttggttaaaaatttgtatcaaatacat 31469142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 728
Target Start/End: Original strand, 35693949 - 35693989
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  35693949 aaaaattaatgtatttggtttaaaattagtatcaaatacat 35693989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 663 - 728
Target Start/End: Complemental strand, 38935469 - 38935402
Alignment:
Q  663 caaaaatataaacaaatattaaccaaaaaa--ttaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    |||||||||||||||| ||||  ||| |||  ||||||||||| ||||||||| ||||||||||||||    
T  38935469 caaaaatataaacaaaaattactcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacat 38935402  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 728
Target Start/End: Complemental strand, 43398917 - 43398877
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  43398917 aaaagttaatgtatttggttcaaaatttgtaccaaatacat 43398877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 727
Target Start/End: Complemental strand, 17437205 - 17437166
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaataca 727  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  17437205 aaaaattaatgtatttagttcaaaatttgtaccaaataca 17437166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 688 - 721
Target Start/End: Original strand, 10459297 - 10459330
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatca 721  Q
    |||| |||||||||||||||||||||||||||||    
T  10459297 aaaagttaatgtatttggttcaaaatttgtatca 10459330  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 728
Target Start/End: Original strand, 13209995 - 13210035
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  13209995 aaaagttaatgtatttggttcaaaatttgtatcagatacat 13210035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 728
Target Start/End: Complemental strand, 33557854 - 33557814
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  33557854 aaaagttaatgtatttagttcaaaatttgtatcaaatacat 33557814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 665 - 728
Target Start/End: Complemental strand, 29111063 - 29110998
Alignment:
Q  665 aaaatataaacaaatattaaccaa--aaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    |||||||||||||| ||| | |||  ||| ||||||||||||||||||||||| || |||||||||    
T  29111063 aaaatataaacaaaaattgatcaacgaaacttaatgtatttggttcaaaatttataccaaatacat 29110998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 728
Target Start/End: Original strand, 44816498 - 44816538
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  44816498 aaaagttaatgtatttggttcaaaatttgtaccaaatacat 44816538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 727
Target Start/End: Complemental strand, 32652485 - 32652446
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaataca 727  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  32652485 aaaaattaatgtatttggttcaaagtttgtaccaaataca 32652446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 728
Target Start/End: Complemental strand, 8437853 - 8437813
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  8437853 aaaaattaatgtatttgattcaaaatttgtaccaaatacat 8437813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 728
Target Start/End: Complemental strand, 3694066 - 3694026
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  3694066 aaaaattaatgtatttgattcaaaatttgtattaaatacat 3694026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 728
Target Start/End: Complemental strand, 5056373 - 5056333
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  5056373 aaaaattaacgtatttgattcaaaatttgtatcaaatacat 5056333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 728
Target Start/End: Original strand, 30693366 - 30693406
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  30693366 aaaaattaatgtatttgattcaaaatttgtaccaaatacat 30693406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 688 - 728
Target Start/End: Original strand, 47543630 - 47543670
Alignment:
Q  688 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  47543630 aaaaattaatgaatttggttcaaaatttgtaccaaatacat 47543670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 693 - 728
Target Start/End: Original strand, 35976 - 36011
Alignment:
Q  693 ttaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    |||||||||||||| |||||||||||||||||||||    
T  35976 ttaatgtatttggtacaaaatttgtatcaaatacat 36011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 728
Target Start/End: Complemental strand, 51301 - 51260
Alignment:
Q  687 aaaaaattaatgtatttggttcaaaatttgtatcaaatacat 728  Q
    ||||||||||||||||| ||||||||||| || |||||||||    
T  51301 aaaaaattaatgtatttagttcaaaatttataccaaatacat 51260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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