View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_low_31 (Length: 482)

Name: NF0836_low_31
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_low_31
NF0836_low_31
[»] chr1 (3 HSPs)
chr1 (1-473)||(4809558-4810029)
chr1 (15-147)||(36619486-36619607)
chr1 (115-147)||(22891626-22891658)
[»] chr6 (2 HSPs)
chr6 (1-148)||(6086824-6086971)
chr6 (6-147)||(27739234-27739375)
[»] chr4 (2 HSPs)
chr4 (1-144)||(28627348-28627491)
chr4 (114-147)||(29370037-29370070)
[»] chr2 (5 HSPs)
chr2 (15-147)||(36995840-36995972)
chr2 (1-147)||(36776596-36776742)
chr2 (20-147)||(33005097-33005224)
chr2 (67-147)||(1110549-1110627)
chr2 (115-147)||(6042067-6042099)
[»] chr8 (4 HSPs)
chr8 (1-147)||(776510-776656)
chr8 (1-147)||(782164-782310)
chr8 (1-102)||(8866074-8866175)
chr8 (59-147)||(11921051-11921138)
[»] chr3 (2 HSPs)
chr3 (15-147)||(47923182-47923314)
chr3 (115-147)||(46279556-46279588)
[»] chr5 (3 HSPs)
chr5 (6-147)||(16948333-16948472)
chr5 (105-147)||(7361741-7361783)
chr5 (1-90)||(7361786-7361874)
[»] chr7 (1 HSPs)
chr7 (104-147)||(40702668-40702711)


Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 473
Target Start/End: Original strand, 4809558 - 4810029
Alignment:
Q  1 caacacaatgtaatatatgatatattacggataatatgataataataagtacgttgaggactgcaatgacacctatggttctcctacgagttccgggaca 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||| ||| ||||||||||||||||| || ||||||||| |||||| |||| |||||||||    
T  4809558 caacacaatgtaatatatgatatattatggataatatgataattataggtacgttgaggactgcagtggcacctatgggtctcctgcgagatccgggaca 4809657  T
Q  101 gaccccgggcgtaagcccaggctagctgggtggtaaaaccgcccctgttttagtggataattatatgtatccatatccataatgcaggttttaccatgct 200  Q
    || |||  ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4809658 gagcccaagcgtgtgcccaggctagctgggtggtaaaaccgcccctgttttagtggataattatatgtatccatatccataatgcaggttttaccatgct 4809757  T
Q  201 catttagacccatatcaatttagatattgttacagagtatctctctccaactccttaatttatctctannnnnnnnccctctacttttcgtcacattctt 300  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||         |||||| ||||| ||||||||||    
T  4809758 catttagacccatatcaatttagatattgttatagagtatctctctccaaatccttaatttatctctatttttttttcctctatttttcatcacattctt 4809857  T
Q  301 gatttacttattttctttatcctcgcaccgtcaaatttccgatgaacaagaaaattgatcatctaaattgtaaaattagtcaaaatcttccctcattttt 400  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||    
T  4809858 gatttacttattttctttatcctcgcaccgtcaaatttcctatgaacaagaaaattgatcatctaaattgtaaaattagtcaaaatcttccctatttttt 4809957  T
Q  401 tcaattggtaaacgtacccttgaaactataaaatatcaatcaaattgattacttcgttaacttctagtattat 473  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||    
T  4809958 tcaattggtaaacgtacccttg-aactataaaatatcaatcaaattgattatttcgttaacttctagtattat 4810029  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 36619486 - 36619607
Alignment:
Q  15 atatgatatattacggataatatgataataataagtacgttgaggactgcaatgacacctatggttctcctacgagttccgggacagaccccgggcgtaa 114  Q
    ||||||||| ||| ||||||||||||||| ||| | |||||||||||||   |||||||||||| ||||||||||| ||||           ||||||      
T  36619486 atatgatatgttatggataatatgataattataggcacgttgaggactgttgtgacacctatggatctcctacgagatccg-----------gggcgtgt 36619574  T
Q  115 gcccaggctagctgggtggtaaaaccgcccctg 147  Q
    |||||||||||||||||||||||||||||||||    
T  36619575 gcccaggctagctgggtggtaaaaccgcccctg 36619607  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 22891658 - 22891626
Alignment:
Q  115 gcccaggctagctgggtggtaaaaccgcccctg 147  Q
    ||||||||||||||||||||||| |||||||||    
T  22891658 gcccaggctagctgggtggtaaatccgcccctg 22891626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 92; Significance: 2e-44; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 6086971 - 6086824
Alignment:
Q  1 caacacaatgtaatatatgatatattacggataatatgataataataagtacgttgaggactgcaatgacacctatggttctcctacgagttccgggaca 100  Q
    ||||||||||||| ||||||||||||| ||||||||||||||| ||| ||||||||||||||||| || ||||||||| || |||||||| ||| |||||    
T  6086971 caacacaatgtaacatatgatatattatggataatatgataattataggtacgttgaggactgcagtggcacctatggatcacctacgagatccaggaca 6086872  T
Q  101 gaccccgggcgtaagcccaggctagctgggtggtaaaaccgcccctgt 148  Q
    ||  ||||||||  ||||||||||||||||||||||||||||||||||    
T  6086871 gagtccgggcgtgtgcccaggctagctgggtggtaaaaccgcccctgt 6086824  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 27739234 - 27739375
Alignment:
Q  6 caatgtaatatatgatatattacggataatatgataataataagtacgttgaggactgcaatgacacctatggttctcctacgagttccgggacagaccc 105  Q
    |||| ||| |||||||| | || ||||||||||||||| ||| |||  ||| || ||||| |||  ||||| | ||||| ||||| ||||  ||||| ||    
T  27739234 caatataacatatgataaagtatggataatatgataattataggtaatttgggggctgcagtgattcctataggtctcccacgagatccgtcacagagcc 27739333  T
Q  106 cgggcgtaagcccaggctagctgggtggtaaaaccgcccctg 147  Q
      |||||  ||||| ||| |||||||||||||||||||||||    
T  27739334 taggcgtgtgcccaagcttgctgggtggtaaaaccgcccctg 27739375  T

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Target: chr4 (Bit Score: 88; Significance: 4e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 28627348 - 28627491
Alignment:
Q  1 caacacaatgtaatatatgatatattacggataatatgataataataagtacgttgaggactgcaatgacacctatggttctcctacgagttccgggaca 100  Q
    ||||||||||||| ||||||||| | ||||||||||||||||| ||| ||||||||||||||||  || ||||||| | ||||||||||| |||||||||    
T  28627348 caacacaatgtaacatatgatatgtgacggataatatgataattataggtacgttgaggactgctgtggcacctataggtctcctacgagatccgggaca 28627447  T
Q  101 gaccccgggcgtaagcccaggctagctgggtggtaaaaccgccc 144  Q
    || |||||||||  ||||||||||||||||||||||||||||||    
T  28627448 gagcccgggcgtgtgcccaggctagctgggtggtaaaaccgccc 28627491  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 147
Target Start/End: Complemental strand, 29370070 - 29370037
Alignment:
Q  114 agcccaggctagctgggtggtaaaaccgcccctg 147  Q
    |||||||||||||||||||||||||| |||||||    
T  29370070 agcccaggctagctgggtggtaaaactgcccctg 29370037  T

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Target: chr2 (Bit Score: 77; Significance: 2e-35; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 15 - 147
Target Start/End: Original strand, 36995840 - 36995972
Alignment:
Q  15 atatgatatattacggataatatgataataataagtacgttgaggactgcaatgacacctatggttctcctacgagttccgggacagaccccgggcgtaa 114  Q
    ||||||||| ||| | ||||||||||||| ||| | ||||||||||||||  || ||||||||| ||||||||||| ||||||||||| |||||||||      
T  36995840 atatgatatgttatgcataatatgataattataggcacgttgaggactgctgtggcacctatgggtctcctacgagatccgggacagagcccgggcgtgt 36995939  T
Q  115 gcccaggctagctgggtggtaaaaccgcccctg 147  Q
    |||||||||||||||||||||||||||||||||    
T  36995940 gcccaggctagctgggtggtaaaaccgcccctg 36995972  T

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Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 147
Target Start/End: Complemental strand, 36776742 - 36776596
Alignment:
Q  1 caacacaatgtaatatatgatatattacggataatatgataataataagtacgttgaggactgcaatgacacctatggttctcctacgagttccgggaca 100  Q
    |||||| |||||| |||||||||| |   |||||||||||| | ||| |||| |||||||||||| || ||||||||| |||||||| || | ||||||     
T  36776742 caacaccatgtaacatatgatatactttagataatatgatagttataggtacattgaggactgcagtggcacctatgggtctcctacaagattcgggact 36776643  T
Q  101 gaccccgggcgtaagcccaggctagctgggtggtaaaaccgcccctg 147  Q
    || ||| |||||  ||||||| ||||||||||||||||||| |||||    
T  36776642 gaacccaggcgtgtgcccaggttagctgggtggtaaaaccgtccctg 36776596  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 33005097 - 33005224
Alignment:
Q  20 atatattacggataatatgataataataagtacgttgaggactgcaatgacacctatggttctcctacgagttccgggacagaccccgggcgtaagccca 119  Q
    |||||||| ||||||||||||||| |||  |  || ||||||| || || || |||||| ||||||||||| |||||||| || || ||||| | | |||    
T  33005097 atatattatggataatatgataattatagatgagtggaggactacagtggcatctatgggtctcctacgagatccgggactgagccagggcgaatgtcca 33005196  T
Q  120 ggctagctgggtggtaaaaccgcccctg 147  Q
     |||||||||||||||||| ||||||||    
T  33005197 agctagctgggtggtaaaatcgcccctg 33005224  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 67 - 147
Target Start/End: Complemental strand, 1110627 - 1110549
Alignment:
Q  67 tgacacctatggttctcctacgagttccgggacagaccccgggcgtaagcccaggctagctgggtggtaaaaccgcccctg 147  Q
    ||||||||||||| ||| || ||| |||||||| || |||||||||  ||| |||||||||||||||||||||||||||||    
T  1110627 tgacacctatggt-ctcttatgagatccgggactgagcccgggcgtgtgcc-aggctagctgggtggtaaaaccgcccctg 1110549  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 147
Target Start/End: Complemental strand, 6042099 - 6042067
Alignment:
Q  115 gcccaggctagctgggtggtaaaaccgcccctg 147  Q
    ||||||||||||||||||||||| |||||||||    
T  6042099 gcccaggctagctgggtggtaaatccgcccctg 6042067  T

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Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 776510 - 776656
Alignment:
Q  1 caacacaatgtaatatatgatatattacggataatatgataataataagtacgttgaggactgcaatgacacctatggttctcctacgagttccgggaca 100  Q
    |||||| |||||| ||||||||||||| ||||||||| |||||  || ||| |||||||| |||| || ||| ||||| ||||||||||| ||||||||     
T  776510 caacaccatgtaacatatgatatattatggataatattataattgtaggtaagttgaggattgcagtggcacttatgggtctcctacgagatccgggact 776609  T
Q  101 gaccccgggcgtaagcccaggctagctgggtggtaaaaccgcccctg 147  Q
    || |||||||||  |||||||||||||||||||||||||||||||||    
T  776610 gagcccgggcgtgtgcccaggctagctgggtggtaaaaccgcccctg 776656  T

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Target: chr8; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 782164 - 782310
Alignment:
Q  1 caacacaatgtaatatatgatatattacggataatatgataataataagtacgttgaggactgcaatgacacctatggttctcctacgagttccgggaca 100  Q
    |||||| |||||| ||||||||||||| ||||||||| |||||  || ||| |||||||| |||| || ||| ||||| ||||||||||| ||||||||     
T  782164 caacaccatgtaacatatgatatattatggataatattataattgtaggtaagttgaggattgcagtggcacttatgggtctcctacgagatccgggact 782263  T
Q  101 gaccccgggcgtaagcccaggctagctgggtggtaaaaccgcccctg 147  Q
    || |||||||||  |||||||||||||||||||||||||||||||||    
T  782264 gagcccgggcgtgtgcccaggctagctgggtggtaaaaccgcccctg 782310  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 8866074 - 8866175
Alignment:
Q  1 caacacaatgtaatatatgatatattacggataatatgataataataagtacgttgaggactgcaatgacacctatggttctcctacgagttccgggaca 100  Q
    ||||||||||||| |||| |||| ||| ||||||||||||||| ||| ||||||||||||||||| ||||| |||||  |||||||| || |||||||||    
T  8866074 caacacaatgtaacatattatatgttatggataatatgataattataggtacgttgaggactgcagtgacatctatgaatctcctacaagatccgggaca 8866173  T
Q  101 ga 102  Q
    ||    
T  8866174 ga 8866175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 59 - 147
Target Start/End: Original strand, 11921051 - 11921138
Alignment:
Q  59 gactgcaatgacacctatggttctcctacgagttccgggacagaccccgggcgtaagcccaggctagctgggtggtaaaaccgcccctg 147  Q
    ||||||| ||||||||||||| |||||||||| | |||||| || |||||||    |||||||||||||||||||||||||||||||||    
T  11921051 gactgcagtgacacctatggt-ctcctacgagattcgggactgagcccgggcacgtgcccaggctagctgggtggtaaaaccgcccctg 11921138  T

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Target: chr3 (Bit Score: 73; Significance: 4e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 15 - 147
Target Start/End: Complemental strand, 47923314 - 47923182
Alignment:
Q  15 atatgatatattacggataatatgataataataagtacgttgaggactgcaatgacacctatggttctcctacgagttccgggacagaccccgggcgtaa 114  Q
    ||||||||| ||| ||||||||||||||| ||| |||||||||||||||   || ||||||||| ||||||||||| || |||||||| |||||||||      
T  47923314 atatgatatgttatggataatatgataattataggtacgttgaggactgttgtggcacctatgggtctcctacgagatctgggacagagcccgggcgtgt 47923215  T
Q  115 gcccaggctagctgggtggtaaaaccgcccctg 147  Q
    ||||| |||||||||||||||||||||||||||    
T  47923214 gcccaagctagctgggtggtaaaaccgcccctg 47923182  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 115 - 147
Target Start/End: Original strand, 46279556 - 46279588
Alignment:
Q  115 gcccaggctagctgggtggtaaaaccgcccctg 147  Q
    ||||||||||||||||||||||| |||||||||    
T  46279556 gcccaggctagctgggtggtaaatccgcccctg 46279588  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 6 - 147
Target Start/End: Original strand, 16948333 - 16948472
Alignment:
Q  6 caatgtaatatatgatatattacggataatatgataataataagtacgttgaggactgcaatgacacctatggttctcctacgagttccgggacagaccc 105  Q
    |||||||| |||||||| |||| ||||||||||||||| ||| |||  |||||| ||||| || | ||||||  ||| ||| ||| ||||  | ||| ||    
T  16948333 caatgtaacatatgataaattatggataatatgataattataggtaacttgagggctgcagtggctcctatgaatcttctaggagatccgtcatagagcc 16948432  T
Q  106 cgggcgtaagcccaggctagctgggtggtaaaaccgcccctg 147  Q
    |||| ||  |||||| ||||||| ||||||||||||||||||    
T  16948433 cgggtgt--gcccagactagctgagtggtaaaaccgcccctg 16948472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 147
Target Start/End: Complemental strand, 7361783 - 7361741
Alignment:
Q  105 ccgggcgtaagcccaggctagctgggtggtaaaaccgcccctg 147  Q
    ||||||||  |||||||||||||||||||||||||||||||||    
T  7361783 ccgggcgtgtgcccaggctagctgggtggtaaaaccgcccctg 7361741  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 90
Target Start/End: Complemental strand, 7361874 - 7361786
Alignment:
Q  1 caacacaatgtaatatatgatatattacggataatatgataataataagtacgttgaggactgcaatgacacctatggttctcctacgag 90  Q
    |||||| |||||| |||| || ||||| ||||||||| ||||| ||| ||| ||||| ||||||| || ||| ||||| |||||||||||    
T  7361874 caacaccatgtaacatataatgtattatggataatattataattataggtaagttgatgactgcagtggcac-tatgggtctcctacgag 7361786  T

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Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 147
Target Start/End: Complemental strand, 40702711 - 40702668
Alignment:
Q  104 cccgggcgtaagcccaggctagctgggtggtaaaaccgcccctg 147  Q
    |||||||||  ||||||||||||||||||||||| |||||||||    
T  40702711 cccgggcgtgtgcccaggctagctgggtggtaaatccgcccctg 40702668  T

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