View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_32 (Length: 482)
Name: NF0836_low_32
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 30 - 420
Target Start/End: Original strand, 43238157 - 43238546
Alignment:
| Q |
30 |
caggatgcatttatagcatggacggatccatacattttaatttatgggagcaaaattatatactcaaaatttatataaaaataaatcaatgcaagagtga |
129 |
Q |
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| T |
43238157 |
caggatgcatttatagcagggacggatccatacattttaatttatgggagcaaaattatatactcaaaatttatataaaaataaatcaatgcaagagtga |
43238256 |
T |
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| Q |
130 |
taattaaattaaagacataattatcatcaagcaaaaattggagaatnnnnnnnttatattattttataccaaaataaattgaagacacaccaatatttac |
229 |
Q |
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| T |
43238257 |
taattaaattaaagacatcattatcatcaagcaaaaattggagaataaaaaaattatattattttataccaaaataaattgaagacacatcaatatttac |
43238356 |
T |
|
| Q |
230 |
taattatatttatacatatgttttcatattttaaaatcatagcatgannnnnnnncatttcaaaactgtcacatacattttctctatatgtgagcaaata |
329 |
Q |
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| T |
43238357 |
taattatatttatacatatgttttcatattttaaaatcatagtatga-tttttttcatttcaaaactgtcacattcattttctctatatgtgagcaaata |
43238455 |
T |
|
| Q |
330 |
atcatccaatagtttatttctcataatgttacgcgtttatttattcataactcaaattcaatattctttgaaagggtaatttttcattttg |
420 |
Q |
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| T |
43238456 |
atcatccaacagtttatctctcataatgttacgcgtttatttattcataactcaaattcaatattctttaaaagggtaatttttcattttg |
43238546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 42 - 420
Target Start/End: Original strand, 27428408 - 27428782
Alignment:
| Q |
42 |
atagcatggacggatccatacattttaatttatgggagcaaaattatatactcaaaatttatataaaaataaatcaatgcaagagtgataattaaattaa |
141 |
Q |
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| T |
27428408 |
atagcagggacggatctagaaattttgatttgcggggacaaaattttatactcaacatttatataaaaataaatcaatgcaagagtgatac----aataa |
27428503 |
T |
|
| Q |
142 |
agacataattatcatcaagcaaaaattggagaatnnnnnnnttatattattttataccaaaataaattgaagacacaccaatatttactaattatattta |
241 |
Q |
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|||||||||||||| | |||||||||||||||| |||||| ||||| |||||||| ||||| ||||||| |||||| ||||||||||||||| |
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| T |
27428504 |
agacataattatcaagatgcaaaaattggagaatacaaaaattatatcattttgtaccaaaa--aattggagacacatcaatatctactaattatattta |
27428601 |
T |
|
| Q |
242 |
tacatatgttttcatattttaaaatcatagcatgannnnnnnncatttcaaaactgtcacatacat---tttctctatatgtgagcaaataatcatccaa |
338 |
Q |
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|| ||||| ||||||||||||||| ||||||||| |||||||| ||| |||||||||| |||||||||||||||||||||||||||||| |
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| T |
27428602 |
tatgtatgtcttcatattttaaaattatagcatgatttttt--catttcaacactatcacatacatatttttctctatatgtgagcaaataatcatccac |
27428699 |
T |
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| Q |
339 |
tagtttatttctcataatgttacgcgtttatttattcataactcaaattcaata-ttctttgaaagggtaatttttcattttg |
420 |
Q |
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| T |
27428700 |
caatttatctctcataattttacgcgtttatttattcataaatccaattcaatatttttttgtgagggtaatttttcattttg |
27428782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 420 - 472
Target Start/End: Original strand, 43238604 - 43238656
Alignment:
| Q |
420 |
gggcagctgccctctattgtttggccttagatccgtgcctgtgcctgattcat |
472 |
Q |
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| T |
43238604 |
gggcagctgccctcaattgtttggccttagatctgtgcctgtgcctgattcat |
43238656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 63 - 235
Target Start/End: Original strand, 7339268 - 7339435
Alignment:
| Q |
63 |
attttaatttatgggagcaaaattatatactcaaaatttatataaaaataaatcaatgcaagagtgataattaaattaaagacataattatcatcaagca |
162 |
Q |
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||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||| | | | |
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| T |
7339268 |
attttgatttgtgggggcaaaattatatactcaaaatttatataaaaataaatcaatgcaagagtga----taaaataaagacataattatcacccaaaa |
7339363 |
T |
|
| Q |
163 |
aaaattggagaatnnnnnnnttatattattttataccaaaataaattgaagacacaccaatatttactaatta |
235 |
Q |
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|||||| |||||| |||||| ||||||||| ||| ||||||||||||||||||||| ||||||||| |
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| T |
7339364 |
aaaattagagaatagaaaaattatatcattttatactcaaa-aaattgaagacacaccaatatctactaatta |
7339435 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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