View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_36 (Length: 446)
Name: NF0836_low_36
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_36 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 75 - 446
Target Start/End: Complemental strand, 8070850 - 8070480
Alignment:
| Q |
75 |
aaatcgtattttcgagtatgataccacctaaagagaaaattattttattgttattgttgttgtgaccnnnnnnntgttgtattgcaaacaaaatcacaaa |
174 |
Q |
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| T |
8070850 |
aaattgtattttcgagtatgataccacctaaatagaaaattattttattgttattgttgttgtgaccaaaaaaatgttgtattgcaaacaaaatcacaaa |
8070751 |
T |
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| Q |
175 |
tttcatgcaaatagaagtgagtctcttcgaaggatattgacaattgagtcccttctaaagaaacactagagaaacaagtttgcaattatgatagaaattt |
274 |
Q |
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| T |
8070750 |
ttccatgcaaataaaagtgagtctcttcgaaggatattgacaattgagtcccttctaaagaaacactagagaaacaactctgcaattatgatagaaattt |
8070651 |
T |
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| Q |
275 |
catatcatctctgtctttttaaatcaattacaatttctatcaatcaaaatttgagttctatcgcactaaatttaattagaatttctatcaaacaatgaaa |
374 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||| |
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| T |
8070650 |
catatcatctttgtctttttaaatcaattacaatttctatcaatcaaaatttgagttctatcgcactaaattaagttagaatttctatcaaacaatgaaa |
8070551 |
T |
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| Q |
375 |
aatataccttctttgtagtttatttacatgaaacacctagatatttaactataagctattaaaattgagtca |
446 |
Q |
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| T |
8070550 |
aatctaccttctttgtag-ttatttacatgaaacacctagatatttaactataagctattaaaattgagtca |
8070480 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 444
Target Start/End: Original strand, 44202076 - 44202126
Alignment:
| Q |
394 |
ttatttacatgaaacacctagatatttaactataagctattaaaattgagt |
444 |
Q |
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| T |
44202076 |
ttatttaaatgaaacacctagatatttaactatgaactactaaaattgagt |
44202126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 44201955 - 44202004
Alignment:
| Q |
235 |
aaacactagagaaacaagtttgcaattatgatagaaatttcatatcatct |
284 |
Q |
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| T |
44201955 |
aaacactaaagaaacaattttgaaattaggatagaaatttcatgtcatct |
44202004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 268
Target Start/End: Original strand, 32522672 - 32522732
Alignment:
| Q |
208 |
atattgacaattgagtcccttctaaagaaacactagagaaacaagtttgcaattatgatag |
268 |
Q |
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||||| ||||||||||||| || |||||||||||| ||||||| ||||||||||| |||| |
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| T |
32522672 |
atattaacaattgagtcccctcaaaagaaacactaaagaaacagttttgcaattatcatag |
32522732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 275
Target Start/End: Original strand, 32526897 - 32526965
Alignment:
| Q |
207 |
gatattgacaattgagtcccttctaaagaaacactagagaaacaagtttgcaattatgatagaaatttc |
275 |
Q |
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| T |
32526897 |
gatattaacaattgagttccctcaaaagaaacactaaagaaacaattatgcaattatcatagtaatttc |
32526965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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