View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_low_4 (Length: 794)

Name: NF0836_low_4
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_low_4
NF0836_low_4
[»] chr3 (5 HSPs)
chr3 (58-786)||(26438713-26439446)
chr3 (686-727)||(47783108-47783149)
chr3 (687-727)||(32221509-32221549)
chr3 (687-723)||(46733048-46733084)
chr3 (690-727)||(11256559-11256596)
[»] chr5 (3 HSPs)
chr5 (687-727)||(17858199-17858239)
chr5 (690-726)||(9530947-9530983)
chr5 (688-727)||(20185352-20185391)
[»] chr4 (3 HSPs)
chr4 (687-768)||(8257979-8258059)
chr4 (687-768)||(8271397-8271477)
chr4 (691-724)||(5496893-5496926)
[»] chr2 (7 HSPs)
chr2 (687-724)||(2884287-2884324)
chr2 (687-727)||(31469102-31469142)
chr2 (687-727)||(35693949-35693989)
chr2 (662-727)||(38935402-38935469)
chr2 (687-727)||(43398877-43398917)
chr2 (687-726)||(17437166-17437205)
chr2 (687-720)||(10459297-10459330)
[»] chr8 (3 HSPs)
chr8 (687-727)||(13209995-13210035)
chr8 (687-727)||(33557814-33557854)
chr8 (664-727)||(29110998-29111063)
[»] chr7 (2 HSPs)
chr7 (687-727)||(44816498-44816538)
chr7 (687-726)||(32652446-32652485)
[»] chr6 (1 HSPs)
chr6 (687-727)||(8437813-8437853)
[»] chr1 (4 HSPs)
chr1 (687-727)||(3694026-3694066)
chr1 (687-727)||(5056333-5056373)
chr1 (687-727)||(30693366-30693406)
chr1 (687-727)||(47543630-47543670)
[»] scaffold0067 (1 HSPs)
scaffold0067 (692-727)||(35976-36011)
[»] scaffold0009 (1 HSPs)
scaffold0009 (686-727)||(51260-51301)


Alignment Details
Target: chr3 (Bit Score: 576; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 576; E-Value: 0
Query Start/End: Original strand, 58 - 786
Target Start/End: Original strand, 26438713 - 26439446
Alignment:
Q  58 tgtagcgtgctaaataagatatatacaacataaatgttaacgaaactatagaaattttaatttaccaaattacccaatcatatgacaacaaattattgga 157  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26438713 tgtagcgtgctaaataagatatatacaacataaatgttaaagaaactatggaaattttaatttaccaaattacccaatcatatgacaacaaattattgga 26438812  T
Q  158 gctactaatcactattattaaataatcatgattataaaattattgactcatttatgttctataaataatatatttaaggtgtgacnnnnnnnnngtgtga 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||         ||||||    
T  26438813 gctactaatcactattattaaataatcatgattataaaattattgactcatttatgttctatgaataatatatttaaggtgtgactttttttttgtgtga 26438912  T
Q  258 atagagtatccttgcgtaaaactacggagactaatcattatgttagaaaagattgtatttggtagtaaaatccttactctaaatatttaacattccagca 357  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26438913 atagagtatccttgcgcaaaactactgagactaatcattatgttagaaaggattgtatttggtagtaaaacccttactctaaatatttaacattccagca 26439012  T
Q  358 ttttaatggttgaatttgaactaaatatctttgattacactagaagagatatcttaatatctcatctaaatggtctagagtacttacggtgtatctttgg 457  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  26439013 ttttaatggttgaatttgaactaaatatctttgattacactataagagatatcttaatatctcatctaaatgctctagagtacttacagtgtatctttgg 26439112  T
Q  458 tttgtagaaaattaatgattgacaatatatata-----acttgtatattatttgatttaaaaattaatcatgaggctnnnnnnnnttagtggtaagagat 552  Q
    |||||||||||||||||||||| ||||||||||     ||||||||| |||||||||||||||||||||||||||||        |||||||||||||||    
T  26439113 tttgtagaaaattaatgattgataatatatataactttacttgtatagtatttgatttaaaaattaatcatgaggctaaaaaaaattagtggtaagagat 26439212  T
Q  553 tgaatacaaaattatatttgtctttcattaaaccatgagatatatacaagctatccaaaataacaaaatacattttattttatactaagaaaatattttt 652  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  26439213 tgaatacaaaattatatttgtctttcattaaaccatgagatatatacaagctatccaaaataacaaaatactttttattttatactaagaaaatattttt 26439312  T
Q  653 cccccttttcaaaaatataaacaaatattaacc-aaaaaattaatgtatttggttcaaaatttgtatcaaatacatgttgacccatttttctttacattt 751  Q
     ||||||||| ||||||||| ||||||||| || |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  26439313 tccccttttc-aaaatataagcaaatattagccaaaaaaattaatgtatttgattcaaaatttgtatcaaatacatgttgacccatttttctttatattt 26439411  T
Q  752 tgggacgaagggagtatatatgtataattcatctc 786  Q
    |||||||||||||||||||||||||||||||||||    
T  26439412 tgggacgaagggagtatatatgtataattcatctc 26439446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 686 - 727
Target Start/End: Original strand, 47783108 - 47783149
Alignment:
Q  686 aaaaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    ||||| ||||||||||||||||||||||||||||| ||||||    
T  47783108 aaaaagttaatgtatttggttcaaaatttgtatcagatacat 47783149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 727
Target Start/End: Complemental strand, 32221549 - 32221509
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  32221549 aaaagttaatgtatttggttcaaaatttgtaccaaatacat 32221509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 723
Target Start/End: Original strand, 46733048 - 46733084
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaat 723  Q
    ||||||||||||||||| |||||||||||||||||||    
T  46733048 aaaaattaatgtatttgattcaaaatttgtatcaaat 46733084  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 690 - 727
Target Start/End: Original strand, 11256559 - 11256596
Alignment:
Q  690 aattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    |||||||||||||| | |||||||||||||||||||||    
T  11256559 aattaatgtatttgatccaaaatttgtatcaaatacat 11256596  T

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Target: chr5 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 687 - 727
Target Start/End: Original strand, 17858199 - 17858239
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  17858199 aaaaattaatgtatttggttcaaaatttgtatcagatacat 17858239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 690 - 726
Target Start/End: Original strand, 9530947 - 9530983
Alignment:
Q  690 aattaatgtatttggttcaaaatttgtatcaaataca 726  Q
    ||||||||||||||||||||||||| |||||||||||    
T  9530947 aattaatgtatttggttcaaaatttatatcaaataca 9530983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 688 - 727
Target Start/End: Complemental strand, 20185391 - 20185352
Alignment:
Q  688 aaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    ||||||||||||||||||||||||||||||  ||||||||    
T  20185391 aaaattaatgtatttggttcaaaatttgtacaaaatacat 20185352  T

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Target: chr4 (Bit Score: 34; Significance: 0.000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 687 - 768
Target Start/End: Original strand, 8257979 - 8258059
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaatacatgttgacccatttttctttacattttgggacgaagggagtat 768  Q
    |||| ||||||||||||||||||||||| |||| | |  ||||||||  |||||| |||| ||||||||||| |||||||||    
T  8257979 aaaagttaatgtatttggttcaaaatttatatcgact-tatgttgacatatttttgtttatattttgggacggagggagtat 8258059  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 687 - 768
Target Start/End: Original strand, 8271397 - 8271477
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaatacatgttgacccatttttctttacattttgggacgaagggagtat 768  Q
    |||| ||||||||||||||||||||||| |||| | |  ||||||||  |||||| |||| ||||||||||| |||||||||    
T  8271397 aaaagttaatgtatttggttcaaaatttatatcgact-tatgttgacatatttttgtttatattttgggacggagggagtat 8271477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 691 - 724
Target Start/End: Complemental strand, 5496926 - 5496893
Alignment:
Q  691 attaatgtatttggttcaaaatttgtatcaaata 724  Q
    ||||||||||||||||||||||||||| ||||||    
T  5496926 attaatgtatttggttcaaaatttgtaccaaata 5496893  T

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Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 687 - 724
Target Start/End: Original strand, 2884287 - 2884324
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaata 724  Q
    |||||||||||||||||||||||||||| |||||||||    
T  2884287 aaaaattaatgtatttggttcaaaatttatatcaaata 2884324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 727
Target Start/End: Original strand, 31469102 - 31469142
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    |||| ||||||||||||||| ||||||||||||||||||||    
T  31469102 aaaagttaatgtatttggttaaaaatttgtatcaaatacat 31469142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 727
Target Start/End: Original strand, 35693949 - 35693989
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    |||||||||||||||||||| |||||| |||||||||||||    
T  35693949 aaaaattaatgtatttggtttaaaattagtatcaaatacat 35693989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 38935469 - 38935402
Alignment:
Q  662 caaaaatataaacaaatattaaccaaaaaa--ttaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    |||||||||||||||| ||||  ||| |||  ||||||||||| ||||||||| ||||||||||||||    
T  38935469 caaaaatataaacaaaaattactcaacaaaagttaatgtattttgttcaaaatctgtatcaaatacat 38935402  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 727
Target Start/End: Complemental strand, 43398917 - 43398877
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  43398917 aaaagttaatgtatttggttcaaaatttgtaccaaatacat 43398877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 726
Target Start/End: Complemental strand, 17437205 - 17437166
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaataca 726  Q
    |||||||||||||||| |||||||||||||| ||||||||    
T  17437205 aaaaattaatgtatttagttcaaaatttgtaccaaataca 17437166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 687 - 720
Target Start/End: Original strand, 10459297 - 10459330
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatca 720  Q
    |||| |||||||||||||||||||||||||||||    
T  10459297 aaaagttaatgtatttggttcaaaatttgtatca 10459330  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000005; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 727
Target Start/End: Original strand, 13209995 - 13210035
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    |||| ||||||||||||||||||||||||||||| ||||||    
T  13209995 aaaagttaatgtatttggttcaaaatttgtatcagatacat 13210035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 727
Target Start/End: Complemental strand, 33557854 - 33557814
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    |||| ||||||||||| ||||||||||||||||||||||||    
T  33557854 aaaagttaatgtatttagttcaaaatttgtatcaaatacat 33557814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 664 - 727
Target Start/End: Complemental strand, 29111063 - 29110998
Alignment:
Q  664 aaaatataaacaaatattaaccaa--aaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    |||||||||||||| ||| | |||  ||| ||||||||||||||||||||||| || |||||||||    
T  29111063 aaaatataaacaaaaattgatcaacgaaacttaatgtatttggttcaaaatttataccaaatacat 29110998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000005; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 727
Target Start/End: Original strand, 44816498 - 44816538
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    |||| |||||||||||||||||||||||||| |||||||||    
T  44816498 aaaagttaatgtatttggttcaaaatttgtaccaaatacat 44816538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 687 - 726
Target Start/End: Complemental strand, 32652485 - 32652446
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaataca 726  Q
    |||||||||||||||||||||||| |||||| ||||||||    
T  32652485 aaaaattaatgtatttggttcaaagtttgtaccaaataca 32652446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 727
Target Start/End: Complemental strand, 8437853 - 8437813
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  8437853 aaaaattaatgtatttgattcaaaatttgtaccaaatacat 8437813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 727
Target Start/End: Complemental strand, 3694066 - 3694026
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    ||||||||||||||||| |||||||||||||| ||||||||    
T  3694066 aaaaattaatgtatttgattcaaaatttgtattaaatacat 3694026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 727
Target Start/End: Complemental strand, 5056373 - 5056333
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    ||||||||| ||||||| |||||||||||||||||||||||    
T  5056373 aaaaattaacgtatttgattcaaaatttgtatcaaatacat 5056333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 727
Target Start/End: Original strand, 30693366 - 30693406
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    ||||||||||||||||| ||||||||||||| |||||||||    
T  30693366 aaaaattaatgtatttgattcaaaatttgtaccaaatacat 30693406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 687 - 727
Target Start/End: Original strand, 47543630 - 47543670
Alignment:
Q  687 aaaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    ||||||||||| ||||||||||||||||||| |||||||||    
T  47543630 aaaaattaatgaatttggttcaaaatttgtaccaaatacat 47543670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0067 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 692 - 727
Target Start/End: Original strand, 35976 - 36011
Alignment:
Q  692 ttaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    |||||||||||||| |||||||||||||||||||||    
T  35976 ttaatgtatttggtacaaaatttgtatcaaatacat 36011  T

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Target: scaffold0009 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 686 - 727
Target Start/End: Complemental strand, 51301 - 51260
Alignment:
Q  686 aaaaaattaatgtatttggttcaaaatttgtatcaaatacat 727  Q
    ||||||||||||||||| ||||||||||| || |||||||||    
T  51301 aaaaaattaatgtatttagttcaaaatttataccaaatacat 51260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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