View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_40 (Length: 439)
Name: NF0836_low_40
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_40 |
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Alignment Details
Target: chr8 (Bit Score: 154; Significance: 2e-81; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 108 - 297
Target Start/End: Original strand, 27574238 - 27574430
Alignment:
| Q |
108 |
aaaagaaagatgaaggggaacgttttagagaccacaataacaaatataagcttcaaattctataagagtaatgatatatggatcaattacatcaggt--a |
205 |
Q |
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| T |
27574238 |
aaaagaaagatgaaggggaacgtgttagagaccacaataacaaatataagcttcaaattctataagaataatgatatatggatcaattacatcaggtaga |
27574337 |
T |
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| Q |
206 |
gaaaccaagatactagcaaaacaaa-ggctagaagcctaaccacgtcaactttagcaaaaaagcaatcacatattagattaagactattactt |
297 |
Q |
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| T |
27574338 |
gaaaccaagatactagcaaaacaaagggctagaagcctaaccacgttaactttagcaaaaaagcaatcacacgttagattaagactattactt |
27574430 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 39766394 - 39766436
Alignment:
| Q |
130 |
ttttagagaccacaataacaaatataagcttcaaattctataa |
172 |
Q |
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| T |
39766394 |
ttttagagaccacaataacatataaaagtttcaaattctataa |
39766436 |
T |
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