View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_low_41 (Length: 432)

Name: NF0836_low_41
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_low_41
NF0836_low_41
[»] chr2 (3 HSPs)
chr2 (145-294)||(923592-923737)
chr2 (314-403)||(14455449-14455538)
chr2 (12-74)||(22996457-22996517)
[»] chr3 (1 HSPs)
chr3 (145-360)||(46833160-46833357)
[»] scaffold0003 (2 HSPs)
scaffold0003 (314-403)||(34641-34730)
scaffold0003 (314-403)||(41308-41400)
[»] chr8 (1 HSPs)
chr8 (145-302)||(27540883-27541035)
[»] chr6 (1 HSPs)
chr6 (314-403)||(27445958-27446050)
[»] chr7 (1 HSPs)
chr7 (142-201)||(45032127-45032186)
[»] chr5 (1 HSPs)
chr5 (140-201)||(4357204-4357264)


Alignment Details
Target: chr2 (Bit Score: 83; Significance: 4e-39; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 145 - 294
Target Start/End: Complemental strand, 923737 - 923592
Alignment:
Q  145 tgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaaatctnnnnnnncaccatttttcaatcggaaatcttaaaagaag 244  Q
    |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||       |||||||||||||||  || |||| |||||||    
T  923737 tgcattcatttctaaactctaaaaagacactatttttctatctaaactcttaaagaaatctaaaaagacaccatttttcaatccaaactctt-aaagaag 923639  T
Q  245 aaaaacatatgattagagacacactttaaattaatagttattgaaacata 294  Q
    |||||||||||||||||||||||||||||   |||||| |||||||||||    
T  923638 aaaaacatatgattagagacacactttaa---aatagtgattgaaacata 923592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 14455449 - 14455538
Alignment:
Q  314 tatgaccacttataagcttcatttataaactttgacagcaaagcatgttcatatataatgaaaatggtttcagctacacaaagtgacata 403  Q
    ||||||||| ||||   ||||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  14455449 tatgaccacatatagatttcatttataaactttgacagaaaagcatggtcatatataatgaaaatggttttagctacacaaagtgacata 14455538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 12 - 74
Target Start/End: Complemental strand, 22996517 - 22996457
Alignment:
Q  12 atgaaatagagctaactgttgatgtgtaagttattaataatgaataaatccaaataacttatt 74  Q
    |||||||||||||| || |||||||  ||||||||||||||||||||||||||||||||||||    
T  22996517 atgaaatagagctatctattgatgt--aagttattaataatgaataaatccaaataacttatt 22996457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 69; Significance: 8e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 145 - 360
Target Start/End: Original strand, 46833160 - 46833357
Alignment:
Q  145 tgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaaatctnnnnnnncaccatttttcaatcggaaatcttaaaagaag 244  Q
    ||||||||||| |||||||||| |||||||||||||| |||||||||||| |||  |           ||||||||| |||||| || ||||||| ||||    
T  46833160 tgcattcatttttaaactctaaaaagacaccatttttttatctaaactctaaaaaga-----------caccatttt-caatcgaaactcttaaa-gaag 46833246  T
Q  245 aaaaacatatgattagagacacactttaaattaatagttattgaaacatagtaattgatacattagttttatgaccacttataagcttcatttataaact 344  Q
    ||||||| ||||||||||||||  |||||| ||||    ||||||||||||| ||||||||||||||||||||||||| |||| ||||||||||||||||    
T  46833247 aaaaacacatgattagagacac--tttaaaataatg---attgaaacatagttattgatacattagttttatgaccacatataggcttcatttataaact 46833341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 34641 - 34730
Alignment:
Q  314 tatgaccacttataagcttcatttataaactttgacagcaaagcatgttcatatataatgaaaatggtttcagctacacaaagtgacata 403  Q
    ||||||||| ||||   |||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||    
T  34641 tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcatatataatgaaaatggttttagctacacaaagtgacata 34730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 314 - 403
Target Start/End: Original strand, 41308 - 41400
Alignment:
Q  314 tatgaccacttataagcttcatttataaactttgacagcaaagcatgttca---tatataatgaaaatggtttcagctacacaaagtgacata 403  Q
    ||||||||| ||||   |||||||||||||||||||||||||||||| ||    ||||||||||||||||||| |||||||||||||||||||    
T  41308 tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcgacgtatataatgaaaatggttttagctacacaaagtgacata 41400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 145 - 302
Target Start/End: Original strand, 27540883 - 27541035
Alignment:
Q  145 tgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaaatctnnnnnnncaccatttttcaatcggaaatcttaaaagaag 244  Q
    ||||||||||| ||| || ||| |||||||||||||||||||||||||||||||||| | |       ||| |||||||||||  || |||| |||||||    
T  27540883 tgcattcatttataagctataa-aagacaccatttttctatctaaactcttaaagaactataaaacgacactatttttcaatcaaaattctt-aaagaag 27540980  T
Q  245 aaaaacatatgattagagacacactttaaattaatagttattgaaacatagtaattga 302  Q
    ||||||| ||||||| ||||| |||||||||   |||| |||||||||||||||||||    
T  27540981 aaaaacacatgattaaagacatactttaaat---tagtgattgaaacatagtaattga 27541035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 314 - 403
Target Start/End: Complemental strand, 27446050 - 27445958
Alignment:
Q  314 tatgaccacttataagcttcatttataaactttgacagcaaagcatgttca---tatataatgaaaatggtttcagctacacaaagtgacata 403  Q
    ||||||||| ||||   |||||||||||||||||||||||||||||| ||    ||||||||||||||||||| |||||||||||||||||||    
T  27446050 tatgaccacatatagatttcatttataaactttgacagcaaagcatggtcgacgtatataatgaaaatggttttagctacacaaagtgacata 27445958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 142 - 201
Target Start/End: Complemental strand, 45032186 - 45032127
Alignment:
Q  142 agttgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaa 201  Q
    |||||||| ||||| |||||||| | ||||||| ||||| ||||||| ||||||||||||    
T  45032186 agttgcatacatttataaactcttaaaagacacaattttactatctacactcttaaagaa 45032127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 201
Target Start/End: Complemental strand, 4357264 - 4357204
Alignment:
Q  140 tcagttgcattcatttctaaactctaagaagacaccatttttctatctaaactcttaaagaa 201  Q
    |||| |||||||||||| ||||||| | |||||||  ||||| |||||||||||||||||||    
T  4357264 tcagctgcattcatttccaaactctta-aagacacattttttatatctaaactcttaaagaa 4357204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 757 times since January 2019
Visitors: 6034