View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_42 (Length: 421)
Name: NF0836_low_42
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_42 |
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Alignment Details
Target: chr7 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 14 - 392
Target Start/End: Complemental strand, 26949539 - 26949160
Alignment:
| Q |
14 |
agacattgtttgatagaaaaaagattgataaacatcaaaaaccatttgacattttgagagataaaaagataatgcagagtaatgtaatatgttattgatg |
113 |
Q |
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| T |
26949539 |
agacattgcttgatagaaaaaagattgataaacatcaaaaaccatttgacattttgagagataaaaagataatgtagagtaatgtaatatgttgttgatg |
26949440 |
T |
|
| Q |
114 |
tgatagaaagagaaatatataaagagagaataatatgttgaataagtgtataaaatttaggggtgtttaatat-ttttgtcttataaagatagtgatgat |
212 |
Q |
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| T |
26949439 |
tgatagaaagagatatatataaagagagaataatatgttgaataagtgtataaaatttaggggtgtttaatattttttgtcttataaagatagtgatgat |
26949340 |
T |
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| Q |
213 |
ctcgattagttggatctaaagatactatcaatatcatttatagcacatacattnnnnnnnnntagaaaataattgaatagaaagtgtatgagtgtgtggt |
312 |
Q |
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| T |
26949339 |
ctcaattagttggatctaaagatactatcaatatcatttatagcacacacattaaaaaaaaatagaaaataattgaatagaaagtgtatgagtgtgtggt |
26949240 |
T |
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| Q |
313 |
nnnnnnncataaatcaaccctacatagcaaaagtgcacgaaagcgaaaattatgaatattccacctattggccaagaatt |
392 |
Q |
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| T |
26949239 |
cggggggcataaatcaaccctacatagcaaaagtacacgaaagcgaaaattatgaatattccacctattggccaagaatt |
26949160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 36424704 - 36424744
Alignment:
| Q |
132 |
ataaagagagaataatatgttgaataagtgtataaaattta |
172 |
Q |
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| T |
36424704 |
ataaagagaaaataaaatgttaaataagtgtataaaattta |
36424744 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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