View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_44 (Length: 420)
Name: NF0836_low_44
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_44 |
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Alignment Details
Target: chr6 (Bit Score: 126; Significance: 8e-65; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 252 - 411
Target Start/End: Original strand, 30870197 - 30870364
Alignment:
| Q |
252 |
aaaaatatataaaaaagttaaatttaatgaatccacatta------gttagttagaaaatgttgatatgtgcagcttgaattttctttacacatttttta |
345 |
Q |
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| T |
30870197 |
aaaaatatataaaaaagttaaatttaatgagtccacattactattagttagttagaaaatgttgatatgtgcagcttgaattttctttacacatttttta |
30870296 |
T |
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| Q |
346 |
aaaagtatttataatacaga--atatatatattgacgtataattatactataatcaagtaatctgtgc |
411 |
Q |
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| T |
30870297 |
aaaagtatttataatacagaatatatatatattgacgtataattatactataatcaagtaatccgtgc |
30870364 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 94; E-Value: 9e-46
Query Start/End: Original strand, 31 - 143
Target Start/End: Original strand, 30869783 - 30869896
Alignment:
| Q |
31 |
tgtgtgtgtaaacttattatatttcgcaatcttggttgtttttgatagattctttgatgtttaaaagcttcctaaaa-ttatactattatgcataaaaaa |
129 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| ||||| |||||||||||||||||||||| |
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| T |
30869783 |
tgtgtgtgtaaacttattatatttcgcaatcttggttgtttttgatatattctttgatgtttagaagcttcttaaaatttatactattatgcataaaaaa |
30869882 |
T |
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| Q |
130 |
tactgatattttgt |
143 |
Q |
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| T |
30869883 |
tactgatattttgt |
30869896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 171 - 256
Target Start/End: Original strand, 30869930 - 30870015
Alignment:
| Q |
171 |
accttatatgaataatattttgtagtttaggttagttgagatataaagtctcaacaagggacatccaatataaatttgtataaaaa |
256 |
Q |
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| T |
30869930 |
accttatatgaatgatattttgtagtttaggttagttgagatataaagtctcaacaagggacatccaatataaatttgtataaaaa |
30870015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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