View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_low_46 (Length: 413)

Name: NF0836_low_46
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_low_46
NF0836_low_46
[»] chr7 (2 HSPs)
chr7 (117-409)||(42022594-42022886)
chr7 (124-186)||(22620810-22620874)
[»] chr5 (1 HSPs)
chr5 (122-258)||(41364575-41364711)
[»] scaffold0178 (2 HSPs)
scaffold0178 (143-261)||(6090-6208)
scaffold0178 (209-260)||(6710-6761)
[»] chr2 (2 HSPs)
chr2 (201-260)||(44512408-44512467)
chr2 (174-260)||(36866091-36866177)
[»] chr6 (2 HSPs)
chr6 (131-204)||(1825865-1825938)
chr6 (153-260)||(33246590-33246705)
[»] chr4 (2 HSPs)
chr4 (131-189)||(24899322-24899380)
chr4 (153-186)||(14271045-14271078)
[»] scaffold0332 (1 HSPs)
scaffold0332 (151-191)||(11965-12005)
[»] chr3 (1 HSPs)
chr3 (212-260)||(668077-668125)


Alignment Details
Target: chr7 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 117 - 409
Target Start/End: Complemental strand, 42022886 - 42022594
Alignment:
Q  117 atttgatcaatcacttatttatagttttgatattctaatgactcatcacaatggatctctctagatccttttagagagcatgattcatcacctaatataa 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||||||||||||||    
T  42022886 atttgatcaatcacttatttatagttttgatattctaatgactcatcacaatggaactctctagatccttctagagagcatgactcatcacctaatataa 42022787  T
Q  217 cttggacttatactatcctaatggacctatcttagatcattacacagatcctctcctacgagattttaaaagattaggtttggatcctctcgtacgattt 316  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42022786 cttgaacttatactattctaatggacctatcttagatcattacacagatcctctcctacgagattttaaaagattaggtttgaatcctctcgtacgattt 42022687  T
Q  317 atctatatannnnnnncctctaacttcctcttaaaaattctctctttcataatcatcttttcattttccctcttattctccttcatctcactc 409  Q
    |||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||    
T  42022686 atctatatattttttcgctctaacttcctcttaaaaattctctctttcataatcatcttttcattttccctcttattctccctcgtctcactc 42022594  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 22620810 - 22620874
Alignment:
Q  124 caatcacttatttatagttttgatattcta--atgactcatcacaatggatctctctagatcctt 186  Q
    ||||||||||||||||   |||||||||    |||||||||||||||| ||||||||||||||||    
T  22620810 caatcacttatttataaccttgatattcacctatgactcatcacaatgaatctctctagatcctt 22620874  T

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Target: chr5 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 122 - 258
Target Start/End: Complemental strand, 41364711 - 41364575
Alignment:
Q  122 atcaatcacttatttatagttttgatattctaatgactcatcacaatggatctctctagatccttttagagagcatgattcatcacctaatataacttgg 221  Q
    ||||||||||| |||||||  ||||||||||||||| |||||||||  ||| ||||||||||||| || ||||||||| |||||| ||||||||||||||    
T  41364711 atcaatcacttctttatagccttgatattctaatgattcatcacaaaagatttctctagatccttctaaagagcatgactcatcatctaatataacttgg 41364612  T
Q  222 acttatactatcctaatggacctatcttagatcatta 258  Q
    ||||| ||||| ||||||| |||||| ||||||||||    
T  41364611 acttacactattctaatgggcctatcatagatcatta 41364575  T

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Target: scaffold0178 (Bit Score: 55; Significance: 2e-22; HSPs: 2)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 143 - 261
Target Start/End: Complemental strand, 6208 - 6090
Alignment:
Q  143 ttgatattctaatgactcatcacaatggatctctctagatccttttagagagcatgattcatcacctaatataacttggacttatactatcctaatggac 242  Q
    ||||||||  ||||||||||||  | |||||| | |||||| |||||||||| |||| |||||||||||||||||||| ||||||||||| ||||| | |    
T  6208 ttgatatttcaatgactcatcatcaaggatctttttagatcattttagagagtatgactcatcacctaatataacttgaacttatactattctaataggc 6109  T
Q  243 ctatcttagatcattacac 261  Q
    || |||||||| |||||||    
T  6108 ctttcttagattattacac 6090  T

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Target: scaffold0178; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 209 - 260
Target Start/End: Original strand, 6710 - 6761
Alignment:
Q  209 taatataacttggacttatactatcctaatggacctatcttagatcattaca 260  Q
    |||||||||||||||||||||||| |||||||| ||||||||||||||||||    
T  6710 taatataacttggacttatactattctaatggatctatcttagatcattaca 6761  T

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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 201 - 260
Target Start/End: Complemental strand, 44512467 - 44512408
Alignment:
Q  201 tcatcacctaatataacttggacttatactatcctaatggacctatcttagatcattaca 260  Q
    |||||||||||||||||||||||||||| ||| ||||||||||||||||  |||||||||    
T  44512467 tcatcacctaatataacttggacttataatattctaatggacctatcttgaatcattaca 44512408  T

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Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 174 - 260
Target Start/End: Complemental strand, 36866177 - 36866091
Alignment:
Q  174 tctctagatccttttagagagcatgattcatcacctaatataacttggacttatactatcctaatggacctatcttagatcattaca 260  Q
    ||||||||||||| | |||||| ||| | |||||||||||||||||| |||||||  || |||| || | |||||||||||||||||    
T  36866177 tctctagatccttcttgagagcctgactgatcacctaatataacttgaacttatatcattctaacgggcatatcttagatcattaca 36866091  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 131 - 204
Target Start/End: Complemental strand, 1825938 - 1825865
Alignment:
Q  131 ttatttatagttttgatattctaatgactcatcacaatggatctctctagatccttttagagagcatgattcat 204  Q
    ||||||||||  |||| |||  ||||||||||||||| ||||||||||||||| || |||| ||||||| ||||    
T  1825938 ttatttatagcattgacatttcaatgactcatcacaaaggatctctctagatcattctagaaagcatgactcat 1825865  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 153 - 260
Target Start/End: Complemental strand, 33246705 - 33246590
Alignment:
Q  153 aatgactcatcacaatggatctctctagatcctt----ttagagagcatgattcatcacctaatataa---cttggacttata-ctatcctaatggacct 244  Q
    |||||||||||| ||  ||||| |||||||||||     |||||||||||| ||||||||||||||||   |||||||||| | |||  |||||||  ||    
T  33246705 aatgactcatcataaaagatctttctagatccttctagctagagagcatgactcatcacctaatataacagcttggacttaaagctaatctaatgggact 33246606  T
Q  245 atcttagatcattaca 260  Q
    ||||| ||||||||||    
T  33246605 atcttggatcattaca 33246590  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 131 - 189
Target Start/End: Complemental strand, 24899380 - 24899322
Alignment:
Q  131 ttatttatagttttgatattctaatgactcatcacaatggatctctctagatcctttta 189  Q
    ||||||||||| |||| |||  |||||||| ||||||  ||||||||||||||||||||    
T  24899380 ttatttatagtattgacatttcaatgactcgtcacaaatgatctctctagatcctttta 24899322  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 186
Target Start/End: Original strand, 14271045 - 14271078
Alignment:
Q  153 aatgactcatcacaatggatctctctagatcctt 186  Q
    |||||||||||| |||||||||||||||||||||    
T  14271045 aatgactcatcataatggatctctctagatcctt 14271078  T

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Target: scaffold0332 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 151 - 191
Target Start/End: Complemental strand, 12005 - 11965
Alignment:
Q  151 ctaatgactcatcacaatggatctctctagatccttttaga 191  Q
    ||||||| |||||| ||||||||||||||||||||| ||||    
T  12005 ctaatgagtcatcataatggatctctctagatccttctaga 11965  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 668077 - 668125
Alignment:
Q  212 tataacttggacttatactatcctaatggacctatcttagatcattaca 260  Q
    ||||||||||||||||| |||  |||||| ||||||||||||| |||||    
T  668077 tataacttggacttatattattataatgggcctatcttagatcgttaca 668125  T

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