View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0836_low_47 (Length: 410)
Name: NF0836_low_47
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_47 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 173; Significance: 7e-93; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 10 - 211
Target Start/End: Complemental strand, 41714338 - 41714141
Alignment:
| Q |
10 |
tcataggtactatctacaggtctactttaatttactatccaaaaataagttaatactttatacaataagtcgattccgaattttcttagtgaaataaata |
109 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41714338 |
tcataggtactatctacaagtctactttaatttactatccaaaaataagttaatactttatacaataagtcgattccgaattttcttagggaaataaata |
41714239 |
T |
|
| Q |
110 |
aataatacaagagcttgagagtgctctttcttctcattaaacaagaagaaaacatgtaattgctcttgattttgagattttcttattgctttgaaggtat |
209 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
41714238 |
a----tacaagagcttgagagtgctctttcttctcattaaacaagaagaaaacatgtaattgctcttcattttgagattttcttattgctttgaaggtat |
41714143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 220 - 381
Target Start/End: Complemental strand, 41714117 - 41713954
Alignment:
| Q |
220 |
agttggaataaggtaggcataatatatat--gcacatctttcagacttgtttatagcataagtttaatactcttgtgggattttccccctcttaattgta |
317 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41714117 |
agttggaataaggtaggcataatatatatatgcacatctttcggacttgtttatagcataagtttaatactcttgtgggattttccccctcttaattgta |
41714018 |
T |
|
| Q |
318 |
cttttagctgatgttgttgttgtatcattttggttgttttagtgtatcattttttagttctttg |
381 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41714017 |
cttttagctgatgttgttgttgcatcattttggttgttttagtgtatcattttttagttctttg |
41713954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 14 times since January 2019
Visitors: 6046