View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_48 (Length: 409)
Name: NF0836_low_48
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_48 |
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Alignment Details
Target: chr6 (Bit Score: 169; Significance: 2e-90; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 79 - 312
Target Start/End: Original strand, 32592020 - 32592249
Alignment:
| Q |
79 |
caacaatataaatagtaggtatagtagcagcaatgatcgttgtaggtgccacttgccacctacctaaattgatatacttgtaccctagggcagcaagtcc |
178 |
Q |
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| T |
32592020 |
caacaaaataaagagtaagtatagcagcagcaatgatcgttgtagttgccacttgccacctacctaaattgatatacttgtatcctagggcagcaagtcc |
32592119 |
T |
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| Q |
179 |
agttgacaccatcgcatcagctgaaatgataaatcaatatagtttagttcaattgaattaaatatatttaaactgtaaaaataatagcttaattagggaa |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||||||||||||| || |||||||| |
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| T |
32592120 |
agttgacaccatcgcatcagctgaaatgataaatcaatatagtttagatcaattgaattacatatatctaaactgtaaaaataatggc----ttagggaa |
32592215 |
T |
|
| Q |
279 |
catcataataatgataataaaaatatatacctgt |
312 |
Q |
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||||||||||||||||||||| ||| |||||||| |
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| T |
32592216 |
catcataataatgataataaacatagatacctgt |
32592249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 79 - 312
Target Start/End: Original strand, 32602167 - 32602391
Alignment:
| Q |
79 |
caacaatataaatagtaggtatagtagcagcaatgatcgttgtaggtgccacttgccacctacctaaattgatatacttgtaccctagggcagcaagtcc |
178 |
Q |
| |
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|||||| ||||| |||| |||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32602167 |
caacaaaataaagagtaagtatggtagcagcaatgatcgttgtagttgccacttgccacctacctaaattgatatacttgtaccctagggcagcaagtcc |
32602266 |
T |
|
| Q |
179 |
agttgacaccatcgcatcagctgaaatgataaatcaatatagtttagttcaattgaattaaatatatttaaactgtaaaaataatagcttaattagggaa |
278 |
Q |
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|||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
32602267 |
agttgacaccattgcatcagctgaaatgataaatcaatattgtttacttcaattgaattaaatatatttaaactgtaaaaataa---------tagggaa |
32602357 |
T |
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| Q |
279 |
catcataataatgataataaaaatatatacctgt |
312 |
Q |
| |
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||||||||||||||||||||| |||||||||||| |
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| T |
32602358 |
catcataataatgataataaacatatatacctgt |
32602391 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 139 - 224
Target Start/End: Original strand, 34579503 - 34579588
Alignment:
| Q |
139 |
tacctaaattgatatacttgtaccctagggcagcaagtccagttgacaccatcgcatcagctgaaatgataaatcaatatagttta |
224 |
Q |
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|||||||||| ||||| |||||||||| |||||||| |||||||||||||| || || |||||||| ||||| |||| |||||| |
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| T |
34579503 |
tacctaaattaatatatttgtaccctaaagcagcaaggccagttgacaccattgcgtcggctgaaataataaagtaataaagttta |
34579588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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