View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_49 (Length: 399)
Name: NF0836_low_49
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_49 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 243; Significance: 1e-134; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 35 - 399
Target Start/End: Original strand, 238218 - 238578
Alignment:
| Q |
35 |
cattaaaagtattattctcttctatgagatccctcccttctataaaaacattaaggattccatgggaaacattctattgagtttggcttatccacaacat |
134 |
Q |
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| T |
238218 |
cattaaaagtattattctcctctatgagatccctcccttctataaaaacattaaggattccatgggaagcattctattgagtttggcttatccagaacat |
238317 |
T |
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| Q |
135 |
tatgcctacatggccctgattgttgtacttcccagtgacattctttttctacaaaagcaagcatcatctcgttgttgatcgtaaacgacaaaatagtgaa |
234 |
Q |
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| T |
238318 |
taagcctacatggccctgattcatgtacttcccagtgacaatcttttccgacaaaa--aa--atcatctcgtttttgatcgtaaacgtcaaagaagtaaa |
238413 |
T |
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| Q |
235 |
attcagtattaaatctaaatccacaaaagtataaggtcgttttaattaaggtaccagacctaaaaacaaagttgtaagattctccaaaatttagtgtttg |
334 |
Q |
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| T |
238414 |
attcagtattaaatctaaatccacaaaagtataaggtagattcaactacggtaccaggcctaaaaacgaagttgtaagattctccaaaatttagtgtttg |
238513 |
T |
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| Q |
335 |
agctccaatatcatgatctttgtccttactgtggacaacgagcttaagaccattggttaagttgt |
399 |
Q |
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| T |
238514 |
agctccaatatcatgatctttgtccttacagtggacagtgagcttaacaccattggttaagttgt |
238578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 30 - 399
Target Start/End: Complemental strand, 228673 - 228322
Alignment:
| Q |
30 |
atacacattaaaagtattattctcttctatgagatccctcccttctataaaaacattaaggattccatgggaaacattctattgagtttggcttatccac |
129 |
Q |
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| T |
228673 |
atacacattaaaagtattattctattctctgagatccctcctttctat--------------ttccatgggaagcattctattgagtttggcttatccac |
228588 |
T |
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| Q |
130 |
aacattatgcctacatggccctgattgttgtacttcccagtgacattctttttctacaaaagcaagcatcatctcgttgttgatcgtaaacgacaaaata |
229 |
Q |
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| T |
228587 |
aacattatgcctacatggccctgattcatgtacttcccagcgacaatcttttccgacaaaa--aa--atcatctcgtttttgatcgtaaacgtcaaagat |
228492 |
T |
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| Q |
230 |
gtgaaattcagtattaaatctaaatccacaaaagtataaggtcgttttaattaaggtaccagacctaaaaacaaagttgtaagattctccaaaatttagt |
329 |
Q |
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| T |
228491 |
gtaaaattcagtattaaatctaaatccacaaaagtataaggtagattcaactatggtaccaggcctaaaaacaaagttgtaagattctccaaaatttagt |
228392 |
T |
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| Q |
330 |
gtttgagctccaatatcatgatctttgtccttactgtggacaacgagcttaagaccattggttaagttgt |
399 |
Q |
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| T |
228391 |
gtttgagctccaatatcatgatctttgtccttacagtggacagtgagcttaacaccattggttaagttgt |
228322 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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