View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_50 (Length: 399)
Name: NF0836_low_50
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_50 |
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Alignment Details
Target: chr4 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 1599230 - 1599525
Alignment:
| Q |
12 |
atgaaggttgaatgtaggttctgtggtttcaaatcgaataggaattatc---ttttccaaaaccgaactgtacttttcttgtggaaatctccaatgcaag |
108 |
Q |
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| T |
1599230 |
atgaaggttgaatgtaggttctgtggtttcaaatcgaataggaattatcatcttttccaaaaccgaactgtacttttcttgtggaaatctccaatgcaag |
1599329 |
T |
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| Q |
109 |
tggaaatcatcaatacaacaagaaatatttattatacattatctacactttccttgtggttata--ttaatttgttctactctcacttgtggagtgaagt |
206 |
Q |
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| T |
1599330 |
tggaaatcatcaatacaacaagaaatatttattatacattatctacactttccttgtggttatatattaatttgttctactctcacttgtggagtgaagt |
1599429 |
T |
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| Q |
207 |
tattattgtaattatgaggttctggtccaaaatttgacttagaaccttacacataactagatatatattttgtttgaatttcaatgattcattaat |
302 |
Q |
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| T |
1599430 |
tattattgtaattatgaggttctggtccaaaatttgacttagaaccttacacataactagatatatattttgtttgaatttcaatgattcattaat |
1599525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 24 - 85
Target Start/End: Complemental strand, 41222434 - 41222373
Alignment:
| Q |
24 |
tgtaggttctgtggtttcaaatcgaataggaattatcttttccaaaaccgaactgtactttt |
85 |
Q |
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|||||||| |||||||||||| |||||||||| ||| ||||| ||| || || ||||||||| |
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| T |
41222434 |
tgtaggttatgtggtttcaaaccgaataggaactatattttcaaaacccaaattgtactttt |
41222373 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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