View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_51 (Length: 398)
Name: NF0836_low_51
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_51 |
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Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 369
Target Start/End: Complemental strand, 18514044 - 18513691
Alignment:
| Q |
16 |
atgagagtaatcttatctttgatcgttcatagtcattacaactcagtggtccnnnnnnntgcaagattctttcacagcttgtacgtgcctaattttatct |
115 |
Q |
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| T |
18514044 |
atgagagtaatcttatctttgatcgttcatagtcattacaactcagtggtccaaaaaaaggcaagattctttcacagcttgtacgtgcctaattttatct |
18513945 |
T |
|
| Q |
116 |
gactatgctattatcatcttgcactcgtatgctatatcctattttctctctatgatatcatgtacaattcattttcaactttgtatcactttaaaatatt |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18513944 |
gactatgctattatcatcttgcactcgtatgctatatcctattttctctctatgatatcatgtacaattcattttcaactttgtatcactttaaaatatt |
18513845 |
T |
|
| Q |
216 |
aaagaaaaaagaggatataaaaataatttgcaccagaactacataatatgttacggcctgtagaaaactgatgcagccattgcacctactaggatgaaat |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18513844 |
aaagaaaaaagaggatataaaaataatttgcaccagaactacataatatgttacggcctgtagaaaactgatgcagccattgcacctactaggatgaaat |
18513745 |
T |
|
| Q |
316 |
gttgttatggaatttttgctgtgatttactttcacatggcaattgtgaccgcat |
369 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
18513744 |
gttgttatggaatttttgctgtgatttactttcacatggcagttgtgaccgcat |
18513691 |
T |
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