View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_52 (Length: 392)
Name: NF0836_low_52
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_52 |
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Alignment Details
Target: chr8 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 145 - 364
Target Start/End: Original strand, 4365314 - 4365533
Alignment:
| Q |
145 |
tatacaattcaatacataaaaggacaaagccgtccaaattcacatagaatttacatttagacaatcatatctatcattcaataccttatagaaaggtata |
244 |
Q |
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| T |
4365314 |
tatataattcaatacataaaaggacaaagccgtccaaattcacatagaatttacatttagacaatcatatctatcattgaataccttatagaaaggtata |
4365413 |
T |
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| Q |
245 |
aaacataaaactatatatagaatactataacagtaccaaacaaaaaatttctgcaaaactatccttcaattaaaaccatgaatgatatgtaaaatgaaat |
344 |
Q |
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| T |
4365414 |
aaacataaaactatatatagaatactataacagtaccaaacaaaaaatttctgcaaaactatccttcaattaaaaccatgaatgatatgtaaaatgaaat |
4365513 |
T |
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| Q |
345 |
caaacatttctgtagaattt |
364 |
Q |
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| T |
4365514 |
caaacatttctgtagaattt |
4365533 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 4365271 - 4365321
Alignment:
| Q |
11 |
tatgaaggaccatatattctcacttataataaggataataagctatataat |
61 |
Q |
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| T |
4365271 |
tatgaaggaccatatattctcacttataataaggataataagctatataat |
4365321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 32 - 364
Target Start/End: Original strand, 33652116 - 33652470
Alignment:
| Q |
32 |
acttataataaggataataagctatataatata--cataagaaacattcatatgcaaggtatgcctttaatcctcaatttcaactaataaactttaacat |
129 |
Q |
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| T |
33652116 |
acttataatatgtataatatactatataatatatacataagaaacattcatacgcaaggtatgtctttaatcctcaatttcaactaataacctttaatat |
33652215 |
T |
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| Q |
130 |
ttcactaatatagcttatacaattcaatacataaaaggacaa-----agccgtccaaattcacatagaatttacatttaga-caatca------------ |
211 |
Q |
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| T |
33652216 |
ttcattacatgaacttatacaattcgatacttaaaaggacaagacaaagcattctaaattcacatagaatttatatttagatcaaccatcactaattagt |
33652315 |
T |
|
| Q |
212 |
----tatctatcattcaataccttatagaaaggtataaaacataaaactatatatagaatactataacagtaccaaacaaaaaatttctgcaaaactatc |
307 |
Q |
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||||||||||| ||||||| |||| || ||||||||| ||| || | || |||||||| || |||||| ||| | || |||||||||||||||| |
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| T |
33652316 |
atagtatctatcattgaatacctcataggaaatcataaaacatgaaaataaacatggaatactaaaatagtacc-aaccagaattttctgcaaaactatc |
33652414 |
T |
|
| Q |
308 |
cttcaattaaaaccatgaatgatatgtaaaatgaaatcaaacatttctgtagaattt |
364 |
Q |
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|
| T |
33652415 |
catcagttaaaaccatgaatgatat-taaaacgaaatcaaacatttttgtagaattt |
33652470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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