View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_low_54 (Length: 385)

Name: NF0836_low_54
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_low_54
NF0836_low_54
[»] chr8 (2 HSPs)
chr8 (36-356)||(44006235-44006555)
chr8 (119-193)||(44007536-44007610)
[»] chr7 (4 HSPs)
chr7 (129-211)||(4996414-4996495)
chr7 (133-193)||(4997151-4997211)
chr7 (131-190)||(31173687-31173747)
chr7 (115-193)||(33223181-33223259)
[»] chr6 (5 HSPs)
chr6 (115-193)||(19802548-19802626)
chr6 (40-90)||(19803065-19803115)
chr6 (115-211)||(4221595-4221690)
chr6 (152-214)||(1634940-1635002)
chr6 (117-193)||(19803213-19803290)
[»] chr4 (4 HSPs)
chr4 (130-193)||(9041887-9041950)
chr4 (129-211)||(53687699-53687781)
chr4 (36-77)||(33168635-33168676)
chr4 (130-190)||(55245990-55246049)
[»] scaffold0272 (1 HSPs)
scaffold0272 (115-213)||(8886-8983)
[»] chr3 (1 HSPs)
chr3 (131-209)||(22238578-22238656)


Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 36 - 356
Target Start/End: Complemental strand, 44006555 - 44006235
Alignment:
Q  36 gagatgaaacagagcatgggttataataaaactttgattatactccacggtagttaccattggagttttttcttaatatccggatcaatcaagcggtagt 135  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  44006555 gagatgaaacagagcatgggttatcataaaactttgattatactccacggtagttaccgttggagttttttcttaatatccggatcaatcaagcggtagt 44006456  T
Q  136 taactaccgccgaagataaaaacgtcattttcatatatcaatatgaagttttgaatgttagagaagcaatcttctttatagtttgctgaaccgtgatgct 235  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||    
T  44006455 taactaccgccgaagataaaaacgtcattttcatatgtcaatatgaagttttgaatgtcagagaagtaatcttctttatagtttgctgaaccgtgatgct 44006356  T
Q  236 catatatcacatgacctgattcacttcnnnnnnngtataaacccacgtttgcttttatctttggcccacttgctactgtattcacacctccatttaatta 335  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44006355 catatatcacatgacctgattcacttctttttttgtataaacccacgtttgcttttatctttggcccacttgctactgtattcacacctccatttaatta 44006256  T
Q  336 atagatcaacctagtgtatac 356  Q
    |||||||||||||||||||||    
T  44006255 atagatcaacctagtgtatac 44006235  T

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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 119 - 193
Target Start/End: Original strand, 44007536 - 44007610
Alignment:
Q  119 atcaatcaagcggtagttaactaccgccgaagataaaaacgtcattttcatatatcaatatgaagttttgaatgt 193  Q
    ||||||| | ||||||||||||||||| || ||||||||||||||||  |||| ||||||||| |||||||||||    
T  44007536 atcaatccaacggtagttaactaccgctgaggataaaaacgtcatttctatatgtcaatatgatgttttgaatgt 44007610  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 4996495 - 4996414
Alignment:
Q  129 cggtagttaactaccgccgaagataaaaacgtcattttcatatatcaatatgaagttttgaatgttagagaagcaatcttctt 211  Q
    ||||||||||||||||||  || |||||||||||||||||| | ||||||||| ||||||||||| ||| |||||||||||||    
T  4996495 cggtagttaactaccgccagag-taaaaacgtcattttcatgtgtcaatatgacgttttgaatgtcagaaaagcaatcttctt 4996414  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 133 - 193
Target Start/End: Original strand, 4997151 - 4997211
Alignment:
Q  133 agttaactaccgccgaagataaaaacgtcattttcatatatcaatatgaagttttgaatgt 193  Q
    ||||||||||||||| || |||||||||||||| ||| | |||||||||||||||||||||    
T  4997151 agttaactaccgccggaggtaaaaacgtcatttccatgtgtcaatatgaagttttgaatgt 4997211  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 131 - 190
Target Start/End: Original strand, 31173687 - 31173747
Alignment:
Q  131 gtagttaactaccgc-cgaagataaaaacgtcattttcatatatcaatatgaagttttgaa 190  Q
    |||||||||||| || ||||||||||||||||||||| |||| ||||||||| ||||||||    
T  31173687 gtagttaactacggctcgaagataaaaacgtcatttttatatgtcaatatgacgttttgaa 31173747  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 193
Target Start/End: Original strand, 33223181 - 33223259
Alignment:
Q  115 ccggatcaatcaagcggtagttaactaccgccgaagataaaaacgtcattttcatatatcaatatgaagttttgaatgt 193  Q
    ||||||||||| | |||||||||||||||| || || | |||| |||||||  || | ||||||||| |||||||||||    
T  33223181 ccggatcaatccaacggtagttaactaccgtcggaggttaaaatgtcatttctatgtgtcaatatgacgttttgaatgt 33223259  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 115 - 193
Target Start/End: Complemental strand, 19802626 - 19802548
Alignment:
Q  115 ccggatcaatcaagcggtagttaactaccgccgaagataaaaacgtcattttcatatatcaatatgaagttttgaatgt 193  Q
    ||||||||||| | ||||||||||||||||||| || ||||||| |||||||||| | ||||||||| |||||||||||    
T  19802626 ccggatcaatccaacggtagttaactaccgccggaggtaaaaacatcattttcatgtgtcaatatgatgttttgaatgt 19802548  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 40 - 90
Target Start/End: Original strand, 19803065 - 19803115
Alignment:
Q  40 tgaaacagagcatgggttataataaaactttgattatactccacggtagtt 90  Q
    |||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  19803065 tgaaacagagcatgtgttatcataaaattttgattatactccacggtagtt 19803115  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 115 - 211
Target Start/End: Complemental strand, 4221690 - 4221595
Alignment:
Q  115 ccggatcaatcaagcggtagttaactaccgccgaagataaaaacgtcattttcatatatcaatatgaagttttgaatgttagagaagcaatcttctt 211  Q
    |||||| |||| ||||| |  |||||||||| | || |||||||||||||||||| | |||||||||  ||||||| |||||| |||||||||||||    
T  4221690 ccggataaatctagcggcaactaactaccgctggag-taaaaacgtcattttcatgtgtcaatatgacattttgaaggttagaaaagcaatcttctt 4221595  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 214
Target Start/End: Original strand, 1634940 - 1635002
Alignment:
Q  152 taaaaacgtcattttcatatatcaatatgaagttttgaatgttagagaagcaatcttctttat 214  Q
    |||||||||||||| ||| | ||||||| | ||||||||||| ||| ||||||||||| ||||    
T  1634940 taaaaacgtcatttccatgtgtcaatataacgttttgaatgtcagaaaagcaatcttcattat 1635002  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 117 - 193
Target Start/End: Original strand, 19803213 - 19803290
Alignment:
Q  117 ggatcaatcaagcggtagttaactacc-gccgaagataaaaacgtcattttcatatatcaatatgaagttttgaatgt 193  Q
    ||||||||| | ||||||||||||||| ||||  | |||||| ||||||||||| | ||||||| | |||||||||||    
T  19803213 ggatcaatccaacggtagttaactacccgccgggggtaaaaaagtcattttcatgtgtcaatattacgttttgaatgt 19803290  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 130 - 193
Target Start/End: Complemental strand, 9041950 - 9041887
Alignment:
Q  130 ggtagttaactaccgccgaagataaaaacgtcattttcatatatcaatatgaagttttgaatgt 193  Q
    |||||||||||||||||  || |||||||||||||| ||| ||||||||||| |||||||||||    
T  9041950 ggtagttaactaccgcccgaggtaaaaacgtcatttccatgtatcaatatgacgttttgaatgt 9041887  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 129 - 211
Target Start/End: Complemental strand, 53687781 - 53687699
Alignment:
Q  129 cggtagttaactaccgccgaagataaaaacgtcattttcatatatcaatatgaagttttgaatgttagagaagcaatcttctt 211  Q
    ||||||||||||||||| | ||||||||| |||||||| || | ||||||||| ||||||||||| ||| ||| ||| |||||    
T  53687781 cggtagttaactaccgctggagataaaaatgtcatttttatgtgtcaatatgacgttttgaatgtcagaaaagtaattttctt 53687699  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 36 - 77
Target Start/End: Complemental strand, 33168676 - 33168635
Alignment:
Q  36 gagatgaaacagagcatgggttataataaaactttgattata 77  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  33168676 gagatgaaacagagcatgggttatcataaaactttgattata 33168635  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 130 - 190
Target Start/End: Complemental strand, 55246049 - 55245990
Alignment:
Q  130 ggtagttaactaccgccgaagataaaaacgtcattttcatatatcaatatgaagttttgaa 190  Q
    |||||||||||||| | |||| |||||||||||||| ||| | ||||||||| ||||||||    
T  55246049 ggtagttaactaccactgaag-taaaaacgtcatttccatgtgtcaatatgacgttttgaa 55245990  T

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Target: scaffold0272 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0272
Description:

Target: scaffold0272; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 115 - 213
Target Start/End: Complemental strand, 8983 - 8886
Alignment:
Q  115 ccggatcaatcaagcggtagttaactaccgccgaagataaaaacgtcattttcatatatcaatatgaagttttgaatgttagagaagcaatcttcttta 213  Q
    |||||| |||| ||||||||||||||||||  | || ||||||||||||||  |||| ||| |||||||||||| |||||| | ||||||  |||||||    
T  8983 ccggataaatccagcggtagttaactaccgttggag-taaaaacgtcatttctatatgtcattatgaagttttgtatgttaaaaaagcaacgttcttta 8886  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 209
Target Start/End: Complemental strand, 22238656 - 22238578
Alignment:
Q  131 gtagttaactaccgccgaagataaaaacgtcattttcatatatcaatatgaagttttgaatgttagagaagcaatcttc 209  Q
    ||||||||||| | |||||| |||||||||||||||||||  ||||||||| ||| | ||||| | | |||||||||||    
T  22238656 gtagttaactatcaccgaaggtaaaaacgtcattttcataagtcaatatgacgttctaaatgtcaaaaaagcaatcttc 22238578  T

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