View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_58 (Length: 374)
Name: NF0836_low_58
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_58 |
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Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 12 - 320
Target Start/End: Original strand, 34286849 - 34287159
Alignment:
| Q |
12 |
atgaagcaaataacctcccaaatcacaaatatcaagcatatacgtgtaacatgtaaatatctaaagacagtaannnnnnngatacaattgggtggtcagt |
111 |
Q |
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| T |
34286849 |
atgaagcaaataacctcccaaatcacaaatatcaagcatatacgtgtaacatgtaaatatctaaagacagtaatttttttgatacaattgggtggtcagt |
34286948 |
T |
|
| Q |
112 |
gtctacttgatttgatacaacaatttgttttaagtgtataatagccaaggtttaaaatgcaaaagaaatacaag--nnnnnnnnnnaatccaaagaaata |
209 |
Q |
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| T |
34286949 |
gtctacttgatttgatacaacaatttgttttaagtgtataatagccaaggtttaaaatgcaaaagaaatacaagttttttttttttaatccaaagaaata |
34287048 |
T |
|
| Q |
210 |
caagttgaaaccataattttacttaaatctataaaataattaattcacatatgcatccatgaaataaacattttccatgttagtacattataaattacat |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34287049 |
caagttgaaaccataattttacttaaatctataaaataattaattcgcatatgcatccatgaaataaacattttccatgttagtacattataaattacat |
34287148 |
T |
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| Q |
310 |
ataacaaatct |
320 |
Q |
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||||||||||| |
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| T |
34287149 |
ataacaaatct |
34287159 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 34287299 - 34287341
Alignment:
| Q |
303 |
attacatataacaaatctaatatatgtatttataattcaatac |
345 |
Q |
| |
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| T |
34287299 |
attacatataacaaatctaatatatgtatttataattcaatac |
34287341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 95; Significance: 2e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 201 - 345
Target Start/End: Original strand, 35274313 - 35274454
Alignment:
| Q |
201 |
aaagaaatacaagttgaaaccataattttacttaaatctataaaataattaattcacatatgcatccatgaaataaacattttccatgttagtacattat |
300 |
Q |
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||||||||||||| ||||||||||||||| ||| |||||||||||| |||||||||||||||| |||||||||||| ||| ||| |||||||||||| |
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| T |
35274313 |
aaagaaatacaagctgaaaccataattttcctttaatctataaaat---taattcacatatgcattcatgaaataaacgtttagcatattagtacattat |
35274409 |
T |
|
| Q |
301 |
aaattacatataacaaatctaatatatgtatttataattcaatac |
345 |
Q |
| |
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| T |
35274410 |
aaattacatataacaaatctaatacatgtatttataattcaatac |
35274454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 14 - 137
Target Start/End: Original strand, 35274178 - 35274300
Alignment:
| Q |
14 |
gaagcaaataacctcccaaatcacaaatatcaagcatatacgtgtaacatgtaaatatctaaagacagtaannnnnnngatacaattgggtggtcagtgt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |||| ||| | | |||||||||||||||| |||| |
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| T |
35274178 |
gaagcaaataacctcccaaatcacaaatatcaagcatatacatctaacatgtaaatatgtaaaaacaattattttctt-atacaattgggtggtcggtgt |
35274276 |
T |
|
| Q |
114 |
ctacttgatttgatacaacaattt |
137 |
Q |
| |
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||||||||||| | |||||||||| |
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| T |
35274277 |
ctacttgatttaaaacaacaattt |
35274300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 251 - 304
Target Start/End: Original strand, 19347490 - 19347543
Alignment:
| Q |
251 |
aattcacatatgcatccatgaaataaacattttccatgttagtacattataaat |
304 |
Q |
| |
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||||||||||| |||||||||||||| | |||| || |||||||||||||||| |
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| T |
19347490 |
aattcacatattcatccatgaaataagctttttgaatattagtacattataaat |
19347543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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