View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_6 (Length: 761)
Name: NF0836_low_6
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 358; Significance: 0; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 55 - 460
Target Start/End: Original strand, 11329573 - 11329978
Alignment:
| Q |
55 |
aactttcacccccgccaggtgatgagtcttatcctcgtcgtcacttccctctactgcaatgttgtcttgctcctcataaatctttgaaagatgcaatact |
154 |
Q |
| |
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|||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||||||| |
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| T |
11329573 |
aactttcagccctgccaggtgatgggtcttatcctcgtcgtcacttccctctactgcgatgttgtcttgctcctcaaaaatctttgagagctgcaatact |
11329672 |
T |
|
| Q |
155 |
ctttccttttcaaacttacaactcttgttagcccgtgatgagatctcggaagtagcttcaaattgtttcgttgtccttgtttctttcatcttcaagctat |
254 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11329673 |
ctttccttttcaaacttacgactcttgttagcccatgatgagatctcggaagtagcttcaaattgtttcgttgtccttgtttctttcatcttcaagctat |
11329772 |
T |
|
| Q |
255 |
gttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgggttttgaagccttagcatgcttgccaacatcagcatctctcttttc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11329773 |
gttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgagtattgaagccttagcatgcttgccaacatcatcatctctcttttc |
11329872 |
T |
|
| Q |
355 |
atggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgctcatcc |
454 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11329873 |
atggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgctcatcc |
11329972 |
T |
|
| Q |
455 |
ctatta |
460 |
Q |
| |
|
|||||| |
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|
| T |
11329973 |
ctatta |
11329978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 55 - 460
Target Start/End: Original strand, 11487594 - 11487999
Alignment:
| Q |
55 |
aactttcacccccgccaggtgatgagtcttatcctcgtcgtcacttccctctactgcaatgttgtcttgctcctcataaatctttgaaagatgcaatact |
154 |
Q |
| |
|
|||||||| ||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| || ||||||||| |
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| T |
11487594 |
aactttcagccctgccaggtgatgggtcttatcctcgtcgtcacttccctctactgcgatgttgtcttgctcctcaaaaatctttgagagctgcaatact |
11487693 |
T |
|
| Q |
155 |
ctttccttttcaaacttacaactcttgttagcccgtgatgagatctcggaagtagcttcaaattgtttcgttgtccttgtttctttcatcttcaagctat |
254 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11487694 |
ctttccttttcaaacttacgactcttgttagcccatgatgagatctcggaagtagcttcaaattgtttcgttgtccttgtttctttcatcttcaagctat |
11487793 |
T |
|
| Q |
255 |
gttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgggttttgaagccttagcatgcttgccaacatcagcatctctcttttc |
354 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11487794 |
gttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgagtattgaagccttagcatgcttgccaacatcatcatctctcttttc |
11487893 |
T |
|
| Q |
355 |
atggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgctcatcc |
454 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11487894 |
atggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctcatgctcatcc |
11487993 |
T |
|
| Q |
455 |
ctatta |
460 |
Q |
| |
|
|||||| |
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|
| T |
11487994 |
ctatta |
11487999 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 527 - 757
Target Start/End: Original strand, 11330045 - 11330272
Alignment:
| Q |
527 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttcccccttgaattac |
626 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11330045 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttctcccttgaattac |
11330144 |
T |
|
| Q |
627 |
cataattaaacctatttttctctcgctcaaccctattacgttgttctcttctggaacctctatccttttctgtatccccagaagccctcttgggatgatc |
726 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11330145 |
cataattaaacctatttttctctcgctcaaccctactac---gttctcttctggaacctctatccttttttgtatccccagaagccctcttgggatgatc |
11330241 |
T |
|
| Q |
727 |
cctgtctcttcttcgatgcttcatctcactc |
757 |
Q |
| |
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||||||||||||||||| || | |||||||| |
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|
| T |
11330242 |
cctgtctcttcttcgattctccttctcactc |
11330272 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 527 - 757
Target Start/End: Original strand, 11488066 - 11488293
Alignment:
| Q |
527 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttcccccttgaattac |
626 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
11488066 |
tcactatctttctccaactcccttttcttctcactgtccctatccttcttatctctatccctatgtttctctctatcataatctttctcccttgaattac |
11488165 |
T |
|
| Q |
627 |
cataattaaacctatttttctctcgctcaaccctattacgttgttctcttctggaacctctatccttttctgtatccccagaagccctcttgggatgatc |
726 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
11488166 |
cataattaaacctatttttctctcgctcaaccctactac---gttctcttctggaacctctatccttttttgtatccccagaagccctcttgggatgatc |
11488262 |
T |
|
| Q |
727 |
cctgtctcttcttcgatgcttcatctcactc |
757 |
Q |
| |
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||||||||||||||||| || | |||||||| |
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|
| T |
11488263 |
cctgtctcttcttcgattctccttctcactc |
11488293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 255 - 444
Target Start/End: Original strand, 37380799 - 37380988
Alignment:
| Q |
255 |
gttcttttgatgacaagtatgctgatgtttcaccatcttcatcatcttgattgggttttgaagccttagcatgcttgccaacatcagcatctctcttttc |
354 |
Q |
| |
|
|||||||||||||||||| |||||| || || || |||| ||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||| |
|
|
| T |
37380799 |
gttcttttgatgacaagtttgctgaagtctccccctctttatcatcttgattgagttttgaagccttttcatgcttaccaacatcctcatctctcttttc |
37380898 |
T |
|
| Q |
355 |
atggtagtttaatttatcatcaagattagacaattcaaaatcttcctcacgagcctttcgttttcctctatccattgacctatccttctc |
444 |
Q |
| |
|
|||||| | || | |||||||||||||| ||||| |||||||||| ||||||| | ||||||||||| | |||||||| ||||| |
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|
| T |
37380899 |
atggtaatctactctatcatcaagattacctgattcataatcttcctcgtgagccttcctacttcctctatccctcgacctatctttctc |
37380988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 73 - 120
Target Start/End: Original strand, 37377410 - 37377457
Alignment:
| Q |
73 |
gtgatgagtcttatcctcgtcgtcacttccctctactgcaatgttgtc |
120 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||| ||||| |||||||| |
|
|
| T |
37377410 |
gtgatgtgtcgtatcctcgtcgtcacttccctcaactgcgatgttgtc |
37377457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 173
Target Start/End: Original strand, 37377569 - 37377620
Alignment:
| Q |
122 |
tgctcctcataaatctttgaaagatgcaatactctttccttttcaaacttac |
173 |
Q |
| |
|
||||||||| ||||||| || || |||||||||||||||||||||| ||||| |
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|
| T |
37377569 |
tgctcctcaaaaatcttcgagagctgcaatactctttccttttcaagcttac |
37377620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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