View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_low_61 (Length: 367)

Name: NF0836_low_61
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_low_61
NF0836_low_61
[»] chr1 (5 HSPs)
chr1 (179-338)||(4809296-4809454)
chr1 (11-87)||(4809558-4809634)
chr1 (231-282)||(34501406-34501457)
chr1 (11-73)||(36619486-36619548)
chr1 (92-136)||(4809497-4809541)
[»] chr2 (4 HSPs)
chr2 (224-309)||(36995566-36995651)
chr2 (11-91)||(36776666-36776746)
chr2 (224-268)||(36776912-36776956)
chr2 (11-73)||(36995840-36995902)
[»] chr8 (6 HSPs)
chr8 (224-309)||(8865868-8865952)
chr8 (11-91)||(8866070-8866150)
chr8 (224-306)||(8566635-8566717)
chr8 (224-281)||(11920771-11920828)
chr8 (23-91)||(776506-776574)
chr8 (23-91)||(782160-782228)
[»] chr6 (1 HSPs)
chr6 (11-91)||(6086895-6086975)
[»] chr3 (3 HSPs)
chr3 (224-305)||(47924520-47924601)
chr3 (25-73)||(47923266-47923314)
chr3 (27-91)||(53593241-53593305)
[»] chr4 (2 HSPs)
chr4 (224-309)||(28627095-28627180)
chr4 (24-91)||(28627344-28627411)
[»] chr5 (3 HSPs)
chr5 (231-309)||(36193119-36193197)
chr5 (23-82)||(16948333-16948392)
chr5 (224-282)||(8508355-8508412)


Alignment Details
Target: chr1 (Bit Score: 140; Significance: 3e-73; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 179 - 338
Target Start/End: Complemental strand, 4809454 - 4809296
Alignment:
Q  179 tagaggtcatgtagggatttgaaccatggttcttcatgttaatataccaattcacaattttgctattattttaaaactgtttaatatatattatgaaaat 278  Q
    |||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4809454 tagaggtcatgtagggatttgaaccacggttctccatgttaatataccaattcacaattttgctattattttaaaactgtttaatatatattatgaaaat 4809355  T
Q  279 attttacctaggctttgcaaaatttctggcttccgccggtgcactaaaatgtgcagatat 338  Q
    ||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  4809354 attttacctaggccttgcaaaatttctggc-tccgccggtgcactaaaatgtgcagatat 4809296  T

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Target: chr1; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 87
Target Start/End: Complemental strand, 4809634 - 4809558
Alignment:
Q  11 cataggtgtcattgcagtcctcaacgtacctattattatcatattatccgtaatatatcatatattacattgtgttg 87  Q
    |||||||| || ||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||    
T  4809634 cataggtgccactgcagtcctcaacgtacctataattatcatattatccataatatatcatatattacattgtgttg 4809558  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 231 - 282
Target Start/End: Original strand, 34501406 - 34501457
Alignment:
Q  231 cacaattttgctattattttaaaactgtttaatatatattatgaaaatattt 282  Q
    |||||||||| || ||| |||||||||||||||||||||| |||||||||||    
T  34501406 cacaattttgttagtatcttaaaactgtttaatatatattctgaaaatattt 34501457  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 36619548 - 36619486
Alignment:
Q  11 cataggtgtcattgcagtcctcaacgtacctattattatcatattatccgtaatatatcatat 73  Q
    |||||||||||   ||||||||||||| ||||| ||||||||||||||| ||| |||||||||    
T  36619548 cataggtgtcacaacagtcctcaacgtgcctataattatcatattatccataacatatcatat 36619486  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 92 - 136
Target Start/End: Complemental strand, 4809541 - 4809497
Alignment:
Q  92 tacctgaccttgttatggtgtgtgttcgatctgcggtaactctcc 136  Q
    |||||||||||||||||||||| ||| |||| | |||||||||||    
T  4809541 tacctgaccttgttatggtgtgggtttgatccgtggtaactctcc 4809497  T

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Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 36995651 - 36995566
Alignment:
Q  224 accaattcacaattttgctattattttaaaactgtttaatatatattatgaaaatattttacctaggctttgcaaaatttctggct 309  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||    
T  36995651 accaattcacaattttgctattgttttaaaactgtttaatatatattatgaaaatattttgcccaggctctgcaaaatttctggct 36995566  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 36776666 - 36776746
Alignment:
Q  11 cataggtgtcattgcagtcctcaacgtacctattattatcatattatccgtaatatatcatatattacattgtgttgcagt 91  Q
    |||||||| || |||||||||||| |||||||| | ||||||||||||   | |||||||||| |||||| ||||||||||    
T  36776666 cataggtgccactgcagtcctcaatgtacctataactatcatattatctaaagtatatcatatgttacatggtgttgcagt 36776746  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 224 - 268
Target Start/End: Original strand, 36776912 - 36776956
Alignment:
Q  224 accaattcacaattttgctattattttaaaactgtttaatatata 268  Q
    ||||||||||| |||||||| ||||||||||||||||||||||||    
T  36776912 accaattcacagttttgctaatattttaaaactgtttaatatata 36776956  T

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Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 73
Target Start/End: Complemental strand, 36995902 - 36995840
Alignment:
Q  11 cataggtgtcattgcagtcctcaacgtacctattattatcatattatccgtaatatatcatat 73  Q
    |||||||| ||  |||||||||||||| ||||| ||||||||||||| | ||| |||||||||    
T  36995902 cataggtgccacagcagtcctcaacgtgcctataattatcatattatgcataacatatcatat 36995840  T

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Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 8865952 - 8865868
Alignment:
Q  224 accaattcacaattttgctattattttaaaactgtttaatatatattatgaaaatattttacctaggctttgcaaaatttctggct 309  Q
    |||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |||||||| |||||||||||||    
T  8865952 accaattcacaattttgctattattttaaa-ctgtttaatatatattctgaaaatattttgcccaggctttgaaaaatttctggct 8865868  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 91
Target Start/End: Complemental strand, 8866150 - 8866070
Alignment:
Q  11 cataggtgtcattgcagtcctcaacgtacctattattatcatattatccgtaatatatcatatattacattgtgttgcagt 91  Q
    ||||| ||||| ||||||||||||||||||||| ||||||||||||||| ||| |||| |||| |||||||||||||||||    
T  8866150 catagatgtcactgcagtcctcaacgtacctataattatcatattatccataacatataatatgttacattgtgttgcagt 8866070  T

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Target: chr8; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 224 - 306
Target Start/End: Complemental strand, 8566717 - 8566635
Alignment:
Q  224 accaattcacaattttgctattattttaaaactgtttaatatatattatgaaaatattttacctaggctttgcaaaatttctg 306  Q
    |||||||||||||||   || |||| ||||||||||||||| ||||| ||||| | |||| || |||||||||||||||||||    
T  8566717 accaattcacaatttcaataatattataaaactgtttaataaatattctgaaacttttttgcccaggctttgcaaaatttctg 8566635  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 281
Target Start/End: Complemental strand, 11920828 - 11920771
Alignment:
Q  224 accaattcacaattttgctattattttaaaactgtttaatatatattatgaaaatatt 281  Q
    ||||||||||||||||| |||| || ||||||||||||||||||||| | ||||||||    
T  11920828 accaattcacaattttgttattcttgtaaaactgtttaatatatattctaaaaatatt 11920771  T

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Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 776574 - 776506
Alignment:
Q  23 tgcagtcctcaacgtacctattattatcatattatccgtaatatatcatatattacattgtgttgcagt 91  Q
    |||| |||||||| ||||||  ||||| ||||||||| ||||||||||||| |||||| ||||||||||    
T  776574 tgcaatcctcaacttacctacaattataatattatccataatatatcatatgttacatggtgttgcagt 776506  T

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Target: chr8; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 91
Target Start/End: Complemental strand, 782228 - 782160
Alignment:
Q  23 tgcagtcctcaacgtacctattattatcatattatccgtaatatatcatatattacattgtgttgcagt 91  Q
    |||| |||||||| ||||||  ||||| ||||||||| ||||||||||||| |||||| ||||||||||    
T  782228 tgcaatcctcaacttacctacaattataatattatccataatatatcatatgttacatggtgttgcagt 782160  T

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Target: chr6 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 11 - 91
Target Start/End: Original strand, 6086895 - 6086975
Alignment:
Q  11 cataggtgtcattgcagtcctcaacgtacctattattatcatattatccgtaatatatcatatattacattgtgttgcagt 91  Q
    |||||||| || ||||||||||||||||||||| ||||||||||||||| ||||||||||||| |||||||||||||||||    
T  6086895 cataggtgccactgcagtcctcaacgtacctataattatcatattatccataatatatcatatgttacattgtgttgcagt 6086975  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 224 - 305
Target Start/End: Original strand, 47924520 - 47924601
Alignment:
Q  224 accaattcacaattttgctattattttaaaactgtttaatatatattatgaaaatattttacctaggctttgcaaaatttct 305  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| || || || ||||||||||||    
T  47924520 accaattcacaattttgctattattttaaaattgtttaatatatattctgaaaatattttgcccagactctgcaaaatttct 47924601  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 47923266 - 47923314
Alignment:
Q  25 cagtcctcaacgtacctattattatcatattatccgtaatatatcatat 73  Q
    ||||||||||||||||||| ||||||||||||||| ||| |||||||||    
T  47923266 cagtcctcaacgtacctataattatcatattatccataacatatcatat 47923314  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 91
Target Start/End: Original strand, 53593241 - 53593305
Alignment:
Q  27 gtcctcaacgtacctattattatcatattatccgtaatatatcatatattacattgtgttgcagt 91  Q
    ||||||||||||||||| ||||| ||||||||| ||||||||  ||| ||||||  |||||||||    
T  53593241 gtcctcaacgtacctataattatgatattatccataatatattgtatgttacatgttgttgcagt 53593305  T

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Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 224 - 309
Target Start/End: Complemental strand, 28627180 - 28627095
Alignment:
Q  224 accaattcacaattttgctattattttaaaactgtttaatatatattatgaaaatattttacctaggctttgcaaaatttctggct 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||| || |||||   ||| ||||||||||    
T  28627180 accaattcacaattttgctattattttaaaactgtttaatatatattctggaaatattttgcccaggctcaacaatatttctggct 28627095  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 24 - 91
Target Start/End: Complemental strand, 28627411 - 28627344
Alignment:
Q  24 gcagtcctcaacgtacctattattatcatattatccgtaatatatcatatattacattgtgttgcagt 91  Q
    |||||||||||||||||||| ||||||||||||||||| | ||||||||| |||||||||||||||||    
T  28627411 gcagtcctcaacgtacctataattatcatattatccgtcacatatcatatgttacattgtgttgcagt 28627344  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 231 - 309
Target Start/End: Original strand, 36193119 - 36193197
Alignment:
Q  231 cacaattttgctattattttaaaactgtttaatatatattatgaaaatattttacctaggctttgcaaaatttctggct 309  Q
    ||||||||| ||| ||| ||||||||||| |||||||||||||||||||||||| | || || | ||||||| ||||||    
T  36193119 cacaattttactagtatcttaaaactgttgaatatatattatgaaaatattttatccagactctacaaaattcctggct 36193197  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 16948392 - 16948333
Alignment:
Q  23 tgcagtcctcaacgtacctattattatcatattatccgtaatatatcatatattacattg 82  Q
    ||||| ||||||  ||||||| ||||||||||||||| |||| |||||||| ||||||||    
T  16948392 tgcagccctcaagttacctataattatcatattatccataatttatcatatgttacattg 16948333  T

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Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 224 - 282
Target Start/End: Original strand, 8508355 - 8508412
Alignment:
Q  224 accaattcacaattttgctattattttaaaactgtttaatatatattatgaaaatattt 282  Q
    |||||| || |||||||||| | |||||||||||||||||| ||||| |||||||||||    
T  8508355 accaatccataattttgctagt-ttttaaaactgtttaatacatattctgaaaatattt 8508412  T

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