View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_62 (Length: 364)
Name: NF0836_low_62
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_62 |
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Alignment Details
Target: chr2 (Bit Score: 313; Significance: 1e-176; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 7 - 335
Target Start/End: Complemental strand, 4313959 - 4313631
Alignment:
| Q |
7 |
gttcattgatccaatcttgggaaactatgatatttttggccgagcaaaacatcttcggacatttttgacaaccaattttttctgtcctccattcaacaat |
106 |
Q |
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| T |
4313959 |
gttcattgatccaatcttgggaaactatgatatttttggccgagcaaaacatcttcggacatttttgacaaccaattttttctgtcctccattcaacaac |
4313860 |
T |
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| Q |
107 |
gaaatggcatcatgcatcattttgtcaaatttgaagtgcttgagagtcttgtcattttcccacttttcacattttgatgcattgcctgattcaataggtg |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
4313859 |
gaaatggcatcatgcatcattttgtcaaatttgaagtgcttgagagtcttgtcattttcccacttttcacattttgatgcattgcccgattcaataggtg |
4313760 |
T |
|
| Q |
207 |
aacttatccatttacgttatttggatatctcttacacagctataaagacgttaccagagtcattgtgtaatttgtataatctacaaacgttgaagttgtc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
4313759 |
aacttatccatttacgttatttggatatctcttacacagctataaagacgttaccagagtcattgtgtaatttgtacaatctacaaacgttgaagttgtg |
4313660 |
T |
|
| Q |
307 |
ttattgttatcgtctaagcaggcttccca |
335 |
Q |
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| T |
4313659 |
ttattgttatcgtctaagcaggcttccca |
4313631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 6 - 305
Target Start/End: Original strand, 4254526 - 4254823
Alignment:
| Q |
6 |
agttcattgatccaatcttgggaaactatgatatttttggccgagcaaaacatcttcggacatttttgacaaccaattttttctgtcctccattcaacaa |
105 |
Q |
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|||||| |||||||||||||| || || |||||||||| | |||||||| |||||| | ||||||||||||| |||| || ||||||||||||||| |
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| T |
4254526 |
agttcagtgatccaatcttggaaagctttgatatttttcgtcgagcaaaccatcttagaacatttttgacaatcaatattagacctcctccattcaacaa |
4254625 |
T |
|
| Q |
106 |
tgaaatggcatcatgcatcattttgtcaaatttgaagtgcttgagagtcttgtcattttcccacttttcacattttgatgcattgcctgattcaataggt |
205 |
Q |
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| T |
4254626 |
tgaaaaggcatcatgcatcgttttgtcgaatttaaagtgcttgagagttttgtcatttcacaactctccatattttgatgcattgccagattcaattgat |
4254725 |
T |
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| Q |
206 |
gaacttatccatttacgttatttggatatctcttacacagctataaagacgttaccagagtcattgtgtaatttgtataatctacaaacgttgaagttgt |
305 |
Q |
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||| | |||||||| |||||||| || |||||| |||| ||||||||||| |||||||||||||||||||||||||||| | |||||||||||||||| |
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| T |
4254726 |
gaattaatccatttgcgttatttaaatctctcttccacaactataaagacgctaccagagtcattgtgtaatttgtataa--tgcaaacgttgaagttgt |
4254823 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 122 - 300
Target Start/End: Original strand, 4247523 - 4247701
Alignment:
| Q |
122 |
atcattttgtcaaatttgaagtgcttgagagtcttgtcattttcccacttttcacattttgatgcattgcctgattcaataggtgaacttatccatttac |
221 |
Q |
| |
|
|||||||||| |||||||| | ||||||||| ||||||||| | |||| ||| | | || ||||||| ||||||||||||||| | |||||||| | |
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| T |
4247523 |
atcattttgttgaatttgaaatacttgagagttttgtcatttaactgctttacacttctccatacattgccggattcaataggtgaattgatccatttgc |
4247622 |
T |
|
| Q |
222 |
gttatttggatatctcttacacagctataaagacgttaccagagtcattgtgtaatttgtataatctacaaacgttgaa |
300 |
Q |
| |
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||||||||||| ||||| | ||| | || |||| |||||||| || |||||||| |||||||||||||||| ||||| |
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| T |
4247623 |
gttatttggatctctctagctcaggtgtagagactttaccagactcgttgtgtaacctgtataatctacaaactttgaa |
4247701 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 8 - 335
Target Start/End: Original strand, 41933971 - 41934301
Alignment:
| Q |
8 |
ttcattgatccaatcttgggaaactatgatatttttggccgagcaaaacatcttcggacatttttgacaaccaattttttctgtcctccattcaacaatg |
107 |
Q |
| |
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|||| ||||||||||| || ||||| ||||||||||||||||||||||||||||||||| |||||||||| ||||||| | |||||||||||| |||| |
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| T |
41933971 |
ttcactgatccaatctcggaaaactttgatatttttggccgagcaaaacatcttcggacgtttttgacaatcaattttgaccatcctccattcaaaaatg |
41934070 |
T |
|
| Q |
108 |
aaatggcatcatgcatcattttgtcaaatttgaagtgcttgagagtcttgtcattttcccacttttcacattttgatgcattgcctgattcaataggtga |
207 |
Q |
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||| |||| |||||| |||||||||||||||||||||||||||||| ||||||||||| |||||| || || |||||||||||||||||||||||||||| |
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| T |
41934071 |
aaaaggcaccatgcaccattttgtcaaatttgaagtgcttgagagttttgtcattttcacactttccatatcttgatgcattgcctgattcaataggtga |
41934170 |
T |
|
| Q |
208 |
acttatccatttacgtta---tttggatatctcttacacagctataaagacgttaccagagtcattgtgtaatttgtataatctacaaacgttgaagttg |
304 |
Q |
| |
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||| ||||||||| |||| ||||||||||||| | ||| ||||||||||||||||| |||||||||||||| |||| ||||||||||||||||||||| |
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| T |
41934171 |
actgatccatttatgttattttttggatatctctaaaacaactataaagacgttaccaaagtcattgtgtaatctgtacaatctacaaacgttgaagttg |
41934270 |
T |
|
| Q |
305 |
tcttattgttatcgtctaagcaggcttccca |
335 |
Q |
| |
|
| ||||||| || ||||| |||||||||| |
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| T |
41934271 |
tgttattgtaattatctaaaaaggcttccca |
41934301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 6 - 301
Target Start/End: Complemental strand, 34802034 - 34801739
Alignment:
| Q |
6 |
agttcattgatccaatcttgggaaactatgatatttttggccgagcaaaacatcttcggacatttttgacaaccaattttttctgtcctccattcaacaa |
105 |
Q |
| |
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|||||| ||||| | |||||| | ||| |||||| ||||| || ||||||||| |||| |||||||||| ||||||| | | ||| || ||| | |
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| T |
34802034 |
agttcagtgatctagtcttggaagactttgatatgtttggaaaagaaaaacatctcaggacgtttttgacaatcaattttacatctaatccttttaacca |
34801935 |
T |
|
| Q |
106 |
tgaaatggcatcatgcatcattttgtcaaatttgaagtgcttgagagtcttgtcattttcccacttttcacattttgatgcattgcctgattcaataggt |
205 |
Q |
| |
|
||||| |||| ||||||||||||| |||||||||| ||||||||| ||||||||| | ||| | || || || |||||||||| |||| |||| | |
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|
| T |
34801934 |
tgaaaacgcatggtgcatcattttgttgaatttgaagtacttgagagttttgtcatttcgcaactatccatatctttatgcattgcccgatttgatagat |
34801835 |
T |
|
| Q |
206 |
gaacttatccatttacgttatttggatatctcttacacagctataaagacgttaccagagtcattgtgtaatttgtataatctacaaacgttgaag |
301 |
Q |
| |
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||||| |||||||| |||||||||||| ||||| |||| ||||||| |||||| || ||| |||||||| |||||||||||||||| |||||| |
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|
| T |
34801834 |
gaactgatccatttgcgttatttggatctctctggcacatatataaagctgttaccggattcactgtgtaatatgtataatctacaaactttgaag |
34801739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 188 - 300
Target Start/End: Complemental strand, 6059201 - 6059089
Alignment:
| Q |
188 |
ttgcctgattcaataggtgaacttatccatttacgttatttggatatctcttacacagctataaagacgttaccagagtcattgtgtaatttgtataatc |
287 |
Q |
| |
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||||||||||||||||||||| | |||||||| || || ||| || |||| | |||| |||| ||| || ||||||||||||||||||||||| |||| |
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|
| T |
6059201 |
ttgcctgattcaataggtgaattgatccatttgcgatacttgaatctctcattgacaggaataaggaccttgccagagtcattgtgtaatttgtacaatc |
6059102 |
T |
|
| Q |
288 |
tacaaacgttgaa |
300 |
Q |
| |
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| ||||| ||||| |
|
|
| T |
6059101 |
tgcaaactttgaa |
6059089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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