View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_65 (Length: 360)
Name: NF0836_low_65
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_65 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 6e-96; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 130 - 360
Target Start/End: Complemental strand, 1655906 - 1655676
Alignment:
| Q |
130 |
atgtgtcagtaccatatctaatattagtgtttgtgt-ggtgtttcatataggtttatacgacgaagagatgggaatagaaaactttggatcttacaattt |
228 |
Q |
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| T |
1655906 |
atgtgtcagtgccatatctaatgttagtgtttgtgttggtgcttcata--ggttcatacgacgaagagatgagaataaaaaactttggatcttacaattt |
1655809 |
T |
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| Q |
229 |
cttgcatttgaaacaatgtgttgggcttcttgttcagcagttagaagcatttgaatgccaccttgacctttaaagggatcca-tggtaataactatagat |
327 |
Q |
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| T |
1655808 |
cttgcatttgaaacaatgtgttgggcttcttgttcagcagttagaagcatttgaatgcctccttgacctttaaagggatccattggtaataactatagat |
1655709 |
T |
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| Q |
328 |
caacaaaatcaacattcatagaaatcagaaaat |
360 |
Q |
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| T |
1655708 |
caacaaaatcaacattcatagaaatcagaaaat |
1655676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 96 - 134
Target Start/End: Complemental strand, 1656000 - 1655962
Alignment:
| Q |
96 |
tcaacagcgattggagacgtattcggtgtcatacatgtg |
134 |
Q |
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| T |
1656000 |
tcaacagcgattggagacgtattcggtgtcatacatgtg |
1655962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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