View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_72 (Length: 350)
Name: NF0836_low_72
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_72 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 253
Target Start/End: Complemental strand, 39444887 - 39444649
Alignment:
| Q |
1 |
catccgatcctgaattgtgcatcaaatcaaaagattatatatgagcaagtttcaagatacaaaattcaatatactattggtaggaggactttcaagatgc |
100 |
Q |
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| T |
39444887 |
catccgatcctgaattgtgcatcaaatcaaaagattatatatgagcaagtttcaagatgcaaaattcaatatactattggtaggaggactttcaagatgc |
39444788 |
T |
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| Q |
101 |
atgaacagttgtgcgagtttataattaataactagttttcctcataatcttctcttaagatatgcttctttgtgccgcgaattgtgtgctcccttgtgtg |
200 |
Q |
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| T |
39444787 |
atcaacagttgtgcgagttta----taataactcgttttcctcataatcttctc-taagctatgcttctttgtgctgcgaattgtgtgc----------g |
39444703 |
T |
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| Q |
201 |
ctgagtttaaaagaaaattcccacgtaaatcagaagttt-aatagtaaacatag |
253 |
Q |
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| T |
39444702 |
ctgagtttaaaagaaaaatcccacgtaaatcagaagtttaaatagtaaacatag |
39444649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 79 - 253
Target Start/End: Complemental strand, 39467362 - 39467204
Alignment:
| Q |
79 |
ggtaggaggactttcaagatgcatgaacagttgtgcgagtttataattaataactagttttcctcataatcttctcttaagatatgcttctttgtgccgc |
178 |
Q |
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| T |
39467362 |
ggtaggaggactttcaagattcatgaacagttgtgcgagttta----taataacttgttttcctcataatcttctc-taagttatgcttctttgtgccgc |
39467268 |
T |
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| Q |
179 |
gaattgtgtgctcccttgtgtgctgagtttaaaagaaaattcccacgtaaatcagaagttt-aatagtaaacatag |
253 |
Q |
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| T |
39467267 |
gaa------------ttgtgtgctgagtttaaaagaaaattcccacgtaaatcagaagtttaaatagtaaacatag |
39467204 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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