View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_76 (Length: 344)
Name: NF0836_low_76
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_76 |
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Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 30 - 239
Target Start/End: Complemental strand, 21471731 - 21471522
Alignment:
| Q |
30 |
agcatagtggttagtgcttagctttgcaatctaaagaggcatagttcagttcagactcttagcgaccctagcacatcggtgatcgcttggctttttaata |
129 |
Q |
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| T |
21471731 |
agcatagtggttagtgcttagctttgcaatctaaagaggcatagttcagttcaaactcttagcgaccctagcacatcggtgatcgcttggctttttaata |
21471632 |
T |
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| Q |
130 |
taaaaggacatatttaggtttgattcggagactatgtggccaagtgtctctcccttcgcactaaataaataatatcatcccccctcctatattaatttct |
229 |
Q |
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|||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
21471631 |
taaaaggacatatttaggttcgatttggagactatgtggccaagtgtctctcccttcgcactaaataaataatatcatcccccctcccatattaatttct |
21471532 |
T |
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| Q |
230 |
taagaaaaca |
239 |
Q |
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|||||||||| |
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| T |
21471531 |
taagaaaaca |
21471522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 200 - 334
Target Start/End: Complemental strand, 21501729 - 21501589
Alignment:
| Q |
200 |
aatatcatcccccctcctatattaatttcttaagaaaacagatagataaaacaaaacatgattagtttcgtttgcagaacaaaacatgattagttac--- |
296 |
Q |
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|||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||| || |||||||||||| ||||||| |
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| T |
21501729 |
aatatcattccccctcccatattaatttcttaagaaaacagatagataaaacaaaacataattagttttttttacataacaaaacatgagtagttactta |
21501630 |
T |
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| Q |
297 |
---ttaagctgaaattcaagagatcggatacgcaacagcta |
334 |
Q |
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| T |
21501629 |
actttaagctgaaattctagagattggatacacaacagcta |
21501589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 280 - 334
Target Start/End: Complemental strand, 21471527 - 21471473
Alignment:
| Q |
280 |
aaaacatgattagttacttaagctgaaattcaagagatcggatacgcaacagcta |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
21471527 |
aaaacatgattagttacttaagctgaaattcaagagatcggatacacaacagcta |
21471473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 200 - 267
Target Start/End: Complemental strand, 46006432 - 46006365
Alignment:
| Q |
200 |
aatatcatcccccctcctatattaatttcttaagaaaacagatagataaaacaaaacatgattagttt |
267 |
Q |
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|||||||| || ||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46006432 |
aatatcattcctcctcccatgttaatttcttaagaaaacagatagataaaacaaaacatgattagttt |
46006365 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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