View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_low_77 (Length: 339)

Name: NF0836_low_77
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_low_77
NF0836_low_77
[»] chr8 (35 HSPs)
chr8 (29-326)||(11150916-11151216)
chr8 (74-154)||(10029201-10029281)
chr8 (80-161)||(13873742-13873823)
chr8 (75-179)||(20542427-20542531)
chr8 (74-172)||(44648914-44649012)
chr8 (74-152)||(18200677-18200755)
chr8 (74-155)||(600411-600492)
chr8 (74-179)||(3137439-3137544)
chr8 (74-162)||(3347497-3347585)
chr8 (74-147)||(31331040-31331113)
chr8 (74-165)||(6270133-6270223)
chr8 (77-172)||(33621408-33621503)
chr8 (77-152)||(41726938-41727013)
chr8 (76-181)||(40607339-40607444)
chr8 (86-178)||(4989746-4989838)
chr8 (74-150)||(17720176-17720252)
chr8 (74-148)||(32881152-32881226)
chr8 (92-153)||(1342378-1342439)
chr8 (74-155)||(18045322-18045403)
chr8 (74-134)||(600528-600588)
chr8 (78-134)||(12201835-12201891)
chr8 (78-134)||(12446263-12446319)
chr8 (86-150)||(37561497-37561561)
chr8 (74-172)||(27506924-27507020)
chr8 (74-141)||(44947386-44947452)
chr8 (77-155)||(40489892-40489969)
chr8 (101-171)||(42361491-42361561)
chr8 (74-152)||(43917626-43917704)
chr8 (106-179)||(10652499-10652572)
chr8 (74-147)||(18647462-18647534)
chr8 (28-65)||(23725709-23725746)
chr8 (86-118)||(8866994-8867026)
chr8 (74-171)||(23425240-23425341)
chr8 (86-150)||(33810061-33810124)
chr8 (107-147)||(42654659-42654699)
[»] chr1 (34 HSPs)
chr1 (74-172)||(8001723-8001821)
chr1 (86-155)||(46295864-46295933)
chr1 (74-179)||(26829531-26829636)
chr1 (74-153)||(33148126-33148205)
chr1 (76-155)||(39238872-39238951)
chr1 (74-148)||(27688518-27688592)
chr1 (74-153)||(40699289-40699368)
chr1 (74-146)||(10226464-10226536)
chr1 (107-150)||(50468804-50468848)
chr1 (74-161)||(52429667-52429754)
chr1 (36-153)||(5069497-5069614)
chr1 (86-171)||(11065844-11065929)
chr1 (74-179)||(13969068-13969173)
chr1 (90-147)||(32187108-32187165)
chr1 (104-161)||(34347214-34347271)
chr1 (98-150)||(3529434-3529486)
chr1 (86-150)||(47496868-47496931)
chr1 (74-150)||(48579935-48580011)
chr1 (76-179)||(27539-27642)
chr1 (29-64)||(12527584-12527619)
chr1 (140-179)||(14331786-14331825)
chr1 (133-172)||(27160286-27160325)
chr1 (76-155)||(38169094-38169173)
chr1 (89-179)||(17644740-17644830)
chr1 (107-153)||(18786444-18786490)
chr1 (77-147)||(30627616-30627686)
chr1 (76-146)||(33670765-33670834)
chr1 (106-172)||(34382609-34382675)
chr1 (77-171)||(48282868-48282962)
chr1 (89-150)||(20471330-20471391)
chr1 (89-150)||(20560146-20560207)
chr1 (107-150)||(33827822-33827866)
chr1 (107-150)||(33840099-33840143)
chr1 (77-125)||(37494213-37494261)
[»] chr3 (26 HSPs)
chr3 (75-172)||(6785770-6785867)
chr3 (86-155)||(38359098-38359167)
chr3 (34-165)||(28709549-28709681)
chr3 (91-171)||(42437693-42437773)
chr3 (77-155)||(15671110-15671188)
chr3 (74-148)||(29032451-29032525)
chr3 (74-179)||(635674-635779)
chr3 (74-155)||(55446771-55446852)
chr3 (74-150)||(48338852-48338928)
chr3 (74-152)||(44698257-44698335)
chr3 (77-153)||(26613060-26613136)
chr3 (74-153)||(4020137-4020216)
chr3 (95-150)||(49711004-49711059)
chr3 (117-179)||(12373070-12373132)
chr3 (74-147)||(25958060-25958133)
chr3 (107-147)||(43652470-43652510)
chr3 (77-171)||(27144041-27144136)
chr3 (93-148)||(27639554-27639609)
chr3 (93-152)||(48252267-48252326)
chr3 (32-148)||(40460223-40460340)
chr3 (77-155)||(44291223-44291301)
chr3 (74-172)||(50958899-50958997)
chr3 (74-147)||(11676737-11676810)
chr3 (74-155)||(49261819-49261900)
chr3 (93-153)||(1711919-1711979)
chr3 (76-152)||(8326178-8326254)
[»] chr2 (30 HSPs)
chr2 (98-179)||(36087406-36087487)
chr2 (74-150)||(18717889-18717965)
chr2 (92-179)||(4557629-4557716)
chr2 (74-165)||(13738376-13738469)
chr2 (74-153)||(23453384-23453463)
chr2 (91-153)||(3689614-3689676)
chr2 (29-154)||(8580505-8580631)
chr2 (75-179)||(1870463-1870567)
chr2 (74-150)||(4978750-4978826)
chr2 (74-141)||(4996667-4996734)
chr2 (29-153)||(42251600-42251725)
chr2 (74-162)||(7932877-7932965)
chr2 (90-170)||(15923721-15923801)
chr2 (92-152)||(17641231-17641291)
chr2 (74-178)||(40346747-40346851)
chr2 (74-188)||(1004734-1004848)
chr2 (74-148)||(29526301-29526375)
chr2 (29-139)||(31904232-31904342)
chr2 (92-154)||(42850373-42850435)
chr2 (74-155)||(40574136-40574217)
chr2 (74-114)||(6315926-6315966)
chr2 (140-180)||(12695358-12695398)
chr2 (35-125)||(28331277-28331368)
chr2 (74-125)||(41436364-41436415)
chr2 (86-152)||(29525658-29525724)
chr2 (100-152)||(7669194-7669246)
chr2 (95-171)||(13717237-13717313)
chr2 (122-150)||(18243302-18243330)
chr2 (77-149)||(32909404-32909476)
chr2 (117-153)||(42551958-42551994)
[»] chr7 (25 HSPs)
chr7 (77-177)||(31850719-31850819)
chr7 (75-179)||(19677035-19677139)
chr7 (74-161)||(25530532-25530619)
chr7 (74-171)||(8896575-8896672)
chr7 (74-162)||(16685771-16685860)
chr7 (74-162)||(17660007-17660096)
chr7 (74-152)||(42888342-42888420)
chr7 (86-178)||(18756914-18757006)
chr7 (74-154)||(37928339-37928419)
chr7 (85-150)||(1554017-1554082)
chr7 (74-179)||(12810116-12810221)
chr7 (89-152)||(1309720-1309783)
chr7 (140-179)||(16957615-16957654)
chr7 (86-172)||(39386956-39387042)
chr7 (89-171)||(43118860-43118942)
chr7 (77-114)||(23080659-23080696)
chr7 (130-179)||(24937926-24937975)
chr7 (74-178)||(31487680-31487784)
chr7 (90-141)||(31249568-31249619)
chr7 (100-155)||(34993091-34993146)
chr7 (74-115)||(23142685-23142726)
chr7 (86-152)||(41064297-41064367)
chr7 (86-150)||(18220984-18221048)
chr7 (75-147)||(21515059-21515131)
chr7 (77-149)||(45907033-45907105)
[»] chr4 (34 HSPs)
chr4 (74-172)||(31861404-31861502)
chr4 (77-153)||(16341097-16341173)
chr4 (74-165)||(37183077-37183168)
chr4 (74-160)||(27284111-27284197)
chr4 (92-161)||(31089503-31089572)
chr4 (74-172)||(7437805-7437903)
chr4 (74-147)||(2565412-2565485)
chr4 (74-179)||(12076397-12076502)
chr4 (74-179)||(12094997-12095102)
chr4 (74-150)||(2824814-2824890)
chr4 (89-152)||(20775126-20775189)
chr4 (76-179)||(51099995-51100098)
chr4 (74-184)||(52837228-52837341)
chr4 (74-155)||(13967884-13967965)
chr4 (74-150)||(22019642-22019718)
chr4 (78-170)||(22611875-22611967)
chr4 (74-161)||(31089772-31089858)
chr4 (77-144)||(44190261-44190328)
chr4 (130-179)||(2908180-2908229)
chr4 (74-179)||(27133588-27133693)
chr4 (75-152)||(28176816-28176892)
chr4 (74-155)||(39810696-39810777)
chr4 (89-150)||(47397659-47397720)
chr4 (74-114)||(19480576-19480616)
chr4 (123-171)||(38319517-38319565)
chr4 (78-152)||(28740328-28740403)
chr4 (127-182)||(34236272-34236327)
chr4 (86-145)||(37431785-37431844)
chr4 (74-113)||(44639907-44639946)
chr4 (74-177)||(48419112-48419215)
chr4 (127-181)||(35808315-35808369)
chr4 (74-155)||(42595177-42595258)
chr4 (74-147)||(43970047-43970120)
chr4 (106-179)||(53145200-53145273)
[»] scaffold0079 (1 HSPs)
scaffold0079 (77-153)||(51688-51764)
[»] chr6 (17 HSPs)
chr6 (74-179)||(19320240-19320345)
chr6 (92-179)||(227392-227479)
chr6 (89-148)||(5611129-5611188)
chr6 (75-179)||(17453942-17454046)
chr6 (29-153)||(32134039-32134164)
chr6 (77-147)||(17345843-17345913)
chr6 (74-179)||(2470390-2470495)
chr6 (86-150)||(21809804-21809868)
chr6 (104-179)||(31223253-31223328)
chr6 (106-165)||(32800276-32800335)
chr6 (77-155)||(17506308-17506386)
chr6 (74-152)||(33121307-33121385)
chr6 (77-178)||(2398050-2398150)
chr6 (86-179)||(17834945-17835038)
chr6 (79-155)||(2911460-2911536)
chr6 (107-179)||(6770906-6770978)
chr6 (77-125)||(18493285-18493333)
[»] chr5 (23 HSPs)
chr5 (75-172)||(11815951-11816048)
chr5 (77-150)||(30293821-30293894)
chr5 (77-152)||(11320167-11320242)
chr5 (31-114)||(30840632-30840715)
chr5 (74-171)||(6646327-6646424)
chr5 (74-153)||(14044677-14044754)
chr5 (74-155)||(27544628-27544709)
chr5 (104-185)||(34346951-34347032)
chr5 (74-167)||(41645071-41645164)
chr5 (127-179)||(5471317-5471369)
chr5 (77-179)||(6102870-6102972)
chr5 (85-171)||(8151772-8151858)
chr5 (74-152)||(36482090-36482168)
chr5 (93-150)||(1920744-1920801)
chr5 (74-131)||(2089133-2089190)
chr5 (106-171)||(3600181-3600246)
chr5 (89-154)||(22294038-22294103)
chr5 (95-148)||(35579341-35579394)
chr5 (77-155)||(2611141-2611220)
chr5 (95-141)||(8405821-8405867)
chr5 (89-150)||(3360675-3360736)
chr5 (75-148)||(18242479-18242552)
chr5 (77-150)||(21052626-21052699)
[»] scaffold0204 (1 HSPs)
scaffold0204 (34-177)||(15337-15481)
[»] scaffold0283 (1 HSPs)
scaffold0283 (74-141)||(3364-3431)
[»] scaffold0299 (1 HSPs)
scaffold0299 (74-150)||(18014-18090)
[»] scaffold0002 (1 HSPs)
scaffold0002 (94-154)||(120728-120788)
[»] scaffold0036 (1 HSPs)
scaffold0036 (74-172)||(36571-36669)
[»] scaffold1372 (1 HSPs)
scaffold1372 (89-149)||(1270-1330)
[»] scaffold0329 (1 HSPs)
scaffold0329 (74-114)||(7398-7438)


Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-121; HSPs: 35)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 29 - 326
Target Start/End: Original strand, 11150916 - 11151216
Alignment:
Q  29 agggcattggttaagcattcaaaataagtaagttttcnnnnnnnnttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaatt 128  Q
    ||||||||||||||||||||||||||||||||||||         ||||||||||| || |||||||||||||||||||||||||||||||| |||||||    
T  11150916 agggcattggttaagcattcaaaataagtaagtttttaaaaaaaattgtgtaatcattatttgatcaaaagtaacatcttatatttctaagacaaaaatt 11151015  T
Q  129 ttatttatagattccttaaccattgccatgagggcaccggttaggaagacc-taataatatatac-ttgaaccttatatagtgagaaatgttttgcatct 226  Q
    |||||| |||||||||||| ||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  11151016 ttatttgtagattccttaatcattgccctgagggcaccggttaggaagaccctaataatatataccttgaaccttatatagtgagaaatgttttgcatct 11151115  T
Q  227 aaacacacaaattcatcagctataaactgaaaagttttgcatctatacttcatttttagctagcta-gttttgagttaaactacacaagaacattatctc 325  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||    
T  11151116 aaacacacaaattcatcagctataaactgaaaagttttgcatctatacttcatttttagctagctaggtttagagttaaactacacaagaacattatctc 11151215  T
Q  326 t 326  Q
    |    
T  11151216 t 11151216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 10029201 - 10029281
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgc 154  Q
    |||| |||||| |||||||||||||||||||||||||||||| ||||||||| |||||||| |||||| ||||||||||||    
T  10029201 ttgtataatcattacttgatcaaaagtaacatcttatatttccaagataaaatttttatttgtagatttcttaaccattgc 10029281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 80 - 161
Target Start/End: Original strand, 13873742 - 13873823
Alignment:
Q  80 aatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagg 161  Q
    ||||| ||||| || |||| ||||||||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||    
T  13873742 aatcattacttaattaaaaataacatcttatatttctaagacaaaaattttatttatagattccttaatcattgccctgagg 13873823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 20542427 - 20542531
Alignment:
Q  75 tgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagga 174  Q
    |||||||||| ||||| |||||||||||||||||||||||| ||||  ||| || ||||| ||||||||||||||| |||| ||||||||| | |||| |    
T  20542427 tgtgtaatcattacttaatcaaaagtaacatcttatatttccaagacgaaatttctatttgtagattccttaaccaatgccctgagggcactgtttagca 20542526  T
Q  175 agacc 179  Q
    |||||    
T  20542527 agacc 20542531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 44649012 - 44648914
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 172  Q
    ||||||||||| ||||| |||||||||||||| ||||||||  |||| |||| || ||||| ||||||||||||||||||||  |||||||| ||||||    
T  44649012 ttgtgtaatcattactttatcaaaagtaacattttatattttcaagacaaaatttctatttgtagattccttaaccattgccccgagggcactggttag 44648914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 18200755 - 18200677
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    ||||||||||| ||||| |||||||||||||| |||||||| ||||| |||| |||||||| |||||| ||||||||||    
T  18200755 ttgtgtaatcattacttaatcaaaagtaacatgttatatttttaagacaaaatttttatttgtagatttcttaaccatt 18200677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 600411 - 600492
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    ||||| ||||| ||||| |||||||||||||||||||||||| |||  ||||| ||||||| |||||||||||| |||||||    
T  600411 ttgtgcaatcattactttatcaaaagtaacatcttatatttccaagccaaaaaatttatttgtagattccttaatcattgcc 600492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 3137439 - 3137544
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagg 173  Q
    ||||||||| | |||||||||||||||||||||||| ||||  |||| |||| || ||||| |  ||| ||||||||||||| ||||||||| ||||||     
T  3137439 ttgtgtaataattacttgatcaaaagtaacatcttacattttcaagacaaaatttctatttctgaatttcttaaccattgccctgagggcactggttagc 3137538  T
Q  174 aagacc 179  Q
    ||||||    
T  3137539 aagacc 3137544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 3347585 - 3347497
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgaggg 162  Q
    ||||||||| | ||||| || ||||||||||||||||||||  |||| |||| |||||||| |||||| ||||||||||| ||||||||    
T  3347585 ttgtgtaattattactttattaaaagtaacatcttatattttcaagacaaaatttttatttgtagatttcttaaccattgtcatgaggg 3347497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 31331040 - 31331113
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaa 147  Q
    ||||||||||| |  ||||||||||||||||||||||||||| ||||||||| || ||||| |||| |||||||    
T  31331040 ttgtgtaatcactgtttgatcaaaagtaacatcttatatttcgaagataaaatttctatttgtagaatccttaa 31331113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 6270223 - 6270133
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcac 165  Q
    ||||||||||| ||||| ||||||| ||||| |||||||||| |||| |||| ||||| || ||||||||||||| ||||||  ||||||||    
T  6270223 ttgtgtaatcattactttatcaaaa-taacaccttatatttccaagacaaaatttttaattgtagattccttaactattgccccgagggcac 6270133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 172
Target Start/End: Original strand, 33621408 - 33621503
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 172  Q
    |||||| | ||||||||||||||||| || |||||||| ||||| |||| |||||||| ||||||||||||  |||  | ||| ||||||||||||    
T  33621408 tgtaataattacttgatcaaaagtaaaattttatatttttaagacaaaatttttatttgtagattccttaattattatcctgaaggcaccggttag 33621503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 41726938 - 41727013
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    |||||||| ||||| || |||| |||||| ||||||||| |||| |||| |||||||| |||||||||||||||||    
T  41726938 tgtaatcattactttataaaaaataacattttatatttccaagacaaaatttttatttgtagattccttaaccatt 41727013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 76 - 181
Target Start/End: Original strand, 40607339 - 40607444
Alignment:
Q  76 gtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaa 175  Q
    ||||||| | ||||| ||||||||| | | ||||||||| |||||||||  || |||||||| ||| ||||||||||||| |||||| || |||||| ||    
T  40607339 gtgtaattattacttaatcaaaagtcaaaacttatatttttaagataaattttctatttataaatttcttaaccattgccctgagggtactggttagcaa 40607438  T
Q  176 gaccta 181  Q
     |||||    
T  40607439 taccta 40607444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 4989746 - 4989838
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagac 178  Q
    ||||||||||||| | | | |||||||||  |||| |||  |||||||||||| || ||||||||||||||| ||||||| |||||| |||||    
T  4989746 tacttgatcaaaaatcaaaacttatattttcaagacaaattttttatttatagttttcttaaccattgccataagggcacgggttagcaagac 4989838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 17720252 - 17720176
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||||||||| ||| ||||||||| |||||||||||||||  |||| || | || ||||||||||||| |||||||    
T  17720252 ttgtgtaatcattacatgatcaaaaataacatcttatattttcaagaaaatatttctatttatagattctttaacca 17720176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 32881152 - 32881226
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaac 148  Q
    |||||||||||  ||||||| |||| ||| ||||||||||| ||||| |||| |||||||| |||||| ||||||    
T  32881152 ttgtgtaatcataacttgataaaaaataatatcttatatttttaagacaaaatttttatttgtagatttcttaac 32881226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 92 - 153
Target Start/End: Original strand, 1342378 - 1342439
Alignment:
Q  92 atcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 153  Q
    |||||||||||||||||||||||| ||||||||| || |||||  ||||||  |||||||||    
T  1342378 atcaaaagtaacatcttatatttccaagataaaatttctatttgaagattctctaaccattg 1342439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 18045322 - 18045403
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    ||||||||| | ||| ||| |||||||||||| ||||||||  |||| |||| ||||| || ||||||| ||||||||||||    
T  18045322 ttgtgtaattattacatgaacaaaagtaacatattatattttcaagacaaaatttttagttgtagattctttaaccattgcc 18045403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 600528 - 600588
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttattt 134  Q
    ||||| ||||| ||||| ||||||||||||||| |||||||| |||| ||||| |||||||    
T  600528 ttgtgcaatcattactttatcaaaagtaacatcctatatttccaagacaaaaaatttattt 600588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 12201835 - 12201891
Alignment:
Q  78 gtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttattt 134  Q
    ||||| ||||||||||||||||||||| |||||||||| |||| |||| || |||||    
T  12201835 gtaattaatacttgatcaaaagtaacagcttatatttccaagacaaaatttctattt 12201891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 12446263 - 12446319
Alignment:
Q  78 gtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttattt 134  Q
    ||||| ||||||||||||||||||||| |||||||||| |||| |||| || |||||    
T  12446263 gtaattaatacttgatcaaaagtaacagcttatatttccaagacaaaatttctattt 12446319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 37561561 - 37561497
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||||||||||||||| |||||||||||  || |||||| || |||||||| |||| |||||||    
T  37561561 tacttgatcaaaagtaaaatcttatattttcaaaataaaatttctatttataaattctttaacca 37561497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 27507020 - 27506924
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 172  Q
    ||||||||| | || || ||||||||||| |||||||||||| |  | | || |||||||| ||||||| |||||||||| | |||||||||| |||||    
T  27507020 ttgtgtaattattattttatcaaaagtaatatcttatatttcca--aaacaatttttatttgtagattctttaaccattgtcttgagggcaccagttag 27506924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 44947386 - 44947452
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagatt 141  Q
    |||| |||||||||||| |||||||||||||| ||||||||  ||||  ||| |||||||||||||||    
T  44947386 ttgtataatcaatactttatcaaaagtaacattttatattttcaaga-caaatttttatttatagatt 44947452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 40489892 - 40489969
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    |||||||| ||||| ||||| |||||||| ||||||||  |||  |||| |||||||  ||||||||||||||||||||    
T  40489892 tgtaatcattactttatcaatagtaacattttatatttacaaggcaaaatttttattg-tagattccttaaccattgcc 40489969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 171
Target Start/End: Complemental strand, 42361561 - 42361491
Alignment:
Q  101 aacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 171  Q
    ||||||||||||||| |||| |||| || |||| |||||||| ||||||||| || ||| | |||||||||    
T  42361561 aacatcttatatttcaaagacaaaatttctattaatagattctttaaccattaccctgaagacaccggtta 42361491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 43917626 - 43917704
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    ||||||||| | || ||||| |||||||||  |||||||||  |||| ||||||||||||| ||||||| |||| ||||    
T  43917626 ttgtgtaattattatttgattaaaagtaacgccttatattttcaagacaaaaattttatttgtagattctttaatcatt 43917704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 179
Target Start/End: Complemental strand, 10652572 - 10652499
Alignment:
Q  106 cttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 179  Q
    ||||||||| ||||| |||| || ||||||||||||| ||||  |||||| |||| |||| |||||| ||||||    
T  10652572 cttatatttataagacaaaatttctatttatagattctttaattattgccctgagagcactggttagcaagacc 10652499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 18647534 - 18647462
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaa 147  Q
    |||||||||||  | || ||||||| ||||||||||||||| |||||||||| || ||||| |||| |||||||    
T  18647534 ttgtgtaatcatcattttatcaaaa-taacatcttatatttttaagataaaatttctatttgtagactccttaa 18647462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 65
Target Start/End: Complemental strand, 23725746 - 23725709
Alignment:
Q  28 cagggcattggttaagcattcaaaataagtaagttttc 65  Q
    ||||||||||||||||||| ||||| ||||||||||||    
T  23725746 cagggcattggttaagcatccaaaacaagtaagttttc 23725709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 8867026 - 8866994
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttctaa 118  Q
    ||||||||||||| |||||||||||||||||||    
T  8867026 tacttgatcaaaaataacatcttatatttctaa 8866994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 23425341 - 23425240
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacat----cttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggt 169  Q
    ||||||||||| || |||||||||| ||||||    ||||||||| | ||| |||| |||||||||| |||| |||||||| |||   ||||||||| ||    
T  23425341 ttgtgtaatcattatttgatcaaaaataacatttatcttatatttttgagacaaaatttttatttatggatttcttaaccaatgcaccgagggcaccagt 23425242  T
Q  170 ta 171  Q
    ||    
T  23425241 ta 23425240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 33810124 - 33810061
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||| ||||||| ||||| ||||||||| |||||||||| || ||||| || ||||||||||||    
T  33810124 tacttcatcaaaa-taacaacttatatttttaagataaaatttctatttctaaattccttaacca 33810061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 147
Target Start/End: Original strand, 42654659 - 42654699
Alignment:
Q  107 ttatatttctaagataaaaattttatttatagattccttaa 147  Q
    |||||||||||||| |||||||||||| |||||||| ||||    
T  42654659 ttatatttctaagacaaaaattttattgatagattctttaa 42654699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 34)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 8001821 - 8001723
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 172  Q
    ||||||||||| ||||| |||||||||||||||||||||||  ||||||||| || ||||| |||||||||||||||||||| ||||||||| ||||||    
T  8001821 ttgtgtaatcattactttatcaaaagtaacatcttatattttcaagataaaatttctatttctagattccttaaccattgccctgagggcactggttag 8001723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 46295933 - 46295864
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    |||||||||||||||||||| ||||||||  ||||||||| |||||||| ||||||||||||||||||||    
T  46295933 tacttgatcaaaagtaacattttatattttcaagataaaatttttatttgtagattccttaaccattgcc 46295864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 26829531 - 26829636
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagg 173  Q
    ||||||||||| ||||| |||||||||||||||||||||||| |||| |||| || || || || ||| ||||||||||||| | |||||||  |||||     
T  26829531 ttgtgtaatcattactttatcaaaagtaacatcttatatttccaagacaaaatttctaattgtaaatttcttaaccattgcccttagggcacttgttagc 26829630  T
Q  174 aagacc 179  Q
    ||||||    
T  26829631 aagacc 26829636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 33148205 - 33148126
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 153  Q
    ||||||||||| |||||||||||||||| |||||||||||| ||||| |||| ||  |||| || |||||||||||||||    
T  33148205 ttgtgtaatcattacttgatcaaaagtagcatcttatatttttaagacaaaatttcaatttgtatattccttaaccattg 33148126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 39238872 - 39238951
Alignment:
Q  76 gtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    ||||||||| |||||||||||| |||||| |||| |||| ||||| |||| |||||||||| ||||||||||||| ||||    
T  39238872 gtgtaatcattacttgatcaaatgtaacaacttacatttttaagagaaaatttttatttatggattccttaaccaatgcc 39238951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 27688518 - 27688592
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaac 148  Q
    ||||||||||| ||||| |||||||||||||||||||||||  || |||||| ||| |||| |||||||||||||    
T  27688518 ttgtgtaatcattactttatcaaaagtaacatcttatattttcaatataaaattttaatttgtagattccttaac 27688592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 40699289 - 40699368
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 153  Q
    ||||||||| | |||| |||||||||||| ||||||| |||| |||| ||||| | ||||| ||||||||||||||||||    
T  40699289 ttgtgtaattattactcgatcaaaagtaaaatcttatgtttccaagacaaaaaatgtatttgtagattccttaaccattg 40699368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 146
Target Start/End: Complemental strand, 10226536 - 10226464
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattcctta 146  Q
    ||||||||||| ||||| ||||||| |||||||||||||||  |||| |||| || ||||| |||||||||||    
T  10226536 ttgtgtaatcattactttatcaaaattaacatcttatattttcaagacaaaatttctatttgtagattcctta 10226464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 50468848 - 50468804
Alignment:
Q  107 ttatatttctaagata-aaaattttatttatagattccttaacca 150  Q
    |||||||||||||||| ||||||||||||||||||||||||||||    
T  50468848 ttatatttctaagatagaaaattttatttatagattccttaacca 50468804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 161
Target Start/End: Original strand, 52429667 - 52429754
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagg 161  Q
    ||||||||||| |||| |||||| ||||||||||||  ||||||||| |||| ||  |||||||||||  |||| ||||||| |||||    
T  52429667 ttgtgtaatcattactagatcaagagtaacatcttaattttctaagacaaaatttcaatttatagattttttaatcattgccctgagg 52429754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 36 - 153
Target Start/End: Original strand, 5069497 - 5069614
Alignment:
Q  36 tggttaagcattcaaaataagtaagttttcnnnnnnnnttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttattta 135  Q
    |||||||||||  ||||||| |||||||||        || |||||||| ||||| ||||||| ||| |||||||||||  |||| |||| |||||| |     
T  5069497 tggttaagcatctaaaataaataagttttcataaaaagttatgtaatcattactttatcaaaaataatatcttatatttacaagacaaaatttttatatg 5069596  T
Q  136 tagattccttaaccattg 153  Q
    ||||||| ||||||||||    
T  5069597 tagattctttaaccattg 5069614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 171
Target Start/End: Complemental strand, 11065929 - 11065844
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 171  Q
    ||||| ||||||||| | | |||||||||  |||| |||  || || |||||| |||||||||||||||| |||||||||||||||    
T  11065929 tacttaatcaaaagtcaaaacttatattttcaagagaaattttataattatagtttccttaaccattgccttgagggcaccggtta 11065844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 13969173 - 13969068
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagg 173  Q
    ||||||||| | ||||| || ||||||||||| ||||||||  |||| |||| || ||||| ||||||||||||| |||| |  ||||||||  |||||     
T  13969173 ttgtgtaataattacttaattaaaagtaacattttatattttcaagacaaaatttctatttgtagattccttaactattgtcccgagggcactagttagc 13969074  T
Q  174 aagacc 179  Q
    ||||||    
T  13969073 aagacc 13969068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 90 - 147
Target Start/End: Original strand, 32187108 - 32187165
Alignment:
Q  90 tgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaa 147  Q
    |||||||||||||||||||||||||  |||| |||| || |||||||| |||||||||    
T  32187108 tgatcaaaagtaacatcttatattttcaagacaaaatttctatttataaattccttaa 32187165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 34347271 - 34347214
Alignment:
Q  104 atcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagg 161  Q
    |||||||||||| |||| |||| || ||||||||||||| ||||| ||||||||||||    
T  34347271 atcttatatttccaagacaaaatttatatttatagattctttaactattgccatgagg 34347214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 98 - 150
Target Start/End: Original strand, 3529434 - 3529486
Alignment:
Q  98 agtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    |||||||||||||||||  ||||||||| || |||||||| ||||||||||||    
T  3529434 agtaacatcttatattttcaagataaaatttctatttatatattccttaacca 3529486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Original strand, 47496868 - 47496931
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||| ||||||| ||||| ||||||||| |||||||||| || |||||||| ||||||||||||    
T  47496868 tacttcatcaaaa-taacaacttatatttttaagataaaatttctatttataaattccttaacca 47496931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 48579935 - 48580011
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||||||||| || ||||| |||| | ||||||||||||||||||| |||| || ||||  ||||||||| |||||    
T  48579935 ttgtgtaatcattatttgattaaaaattacatcttatatttctaagacaaaatttctattagtagattcctcaacca 48580011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 179
Target Start/End: Original strand, 27539 - 27642
Alignment:
Q  76 gtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaa 175  Q
    ||||||| | ||||| ||||||||| | | |||||||||  |||| |||  |||||||||||| | |||||| ||||| | ||||||||| |||||| ||    
T  27539 gtgtaattattacttaatcaaaagtcaaaacttatattttaaagacaaattttttatttatagttcccttaatcattgtcgtgagggcactggttagcaa 27638  T
Q  176 gacc 179  Q
    ||||    
T  27639 gacc 27642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 12527584 - 12527619
Alignment:
Q  29 agggcattggttaagcattcaaaataagtaagtttt 64  Q
    |||||||||||||||||| |||||||||||||||||    
T  12527584 agggcattggttaagcatccaaaataagtaagtttt 12527619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 14331825 - 14331786
Alignment:
Q  140 ttccttaaccattgccatgagggcaccggttaggaagacc 179  Q
    |||||||||||||||| |||||||||||||||| ||||||    
T  14331825 ttccttaaccattgccctgagggcaccggttagcaagacc 14331786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 133 - 172
Target Start/End: Complemental strand, 27160325 - 27160286
Alignment:
Q  133 ttatagattccttaaccattgccatgagggcaccggttag 172  Q
    ||||||||| ||||||||||||| ||||||||||||||||    
T  27160325 ttatagattgcttaaccattgccttgagggcaccggttag 27160286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 76 - 155
Target Start/End: Original strand, 38169094 - 38169173
Alignment:
Q  76 gtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    ||||||||| |||||||||||  |||||| |||||||||  ||||||||  || ||| ||| ||||||||||||| ||||    
T  38169094 gtgtaatcattacttgatcaagtgtaacaacttatattttcaagataaagcttctatatatggattccttaaccaatgcc 38169173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 179
Target Start/End: Complemental strand, 17644830 - 17644740
Alignment:
Q  89 ttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 179  Q
    |||| ||||||||||| |||| ||||| |||| |||| |  ||||| ||||||||||||| |||||  |||||||||  ||||| ||||||    
T  17644830 ttgagcaaaagtaacaacttaaatttccaagacaaaattactatttgtagattccttaactattgctctgagggcacaagttagcaagacc 17644740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 107 - 153
Target Start/End: Complemental strand, 18786490 - 18786444
Alignment:
Q  107 ttatatttctaagataaaaattttatttatagattccttaaccattg 153  Q
    ||||||||| |||| |||| ||||| |||||||||||||||||||||    
T  18786490 ttatatttccaagacaaaagttttacttatagattccttaaccattg 18786444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 30627686 - 30627616
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaa 147  Q
    |||||||| ||||| || |||||| |||  ||||||||| |||| | ||||| ||||||||||||||||||    
T  30627686 tgtaatcattactttataaaaagtgacaggttatatttccaagacataaattctatttatagattccttaa 30627616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 146
Target Start/End: Complemental strand, 33670834 - 33670765
Alignment:
Q  76 gtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattcctta 146  Q
    ||||||| | ||||| |||||||| ||||| |||||||| ||| | ||||||||||||| |||||||||||    
T  33670834 gtgtaataattacttaatcaaaagaaacat-ttatatttataatacaaaaattttatttttagattcctta 33670765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 106 - 172
Target Start/End: Complemental strand, 34382675 - 34382609
Alignment:
Q  106 cttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 172  Q
    ||||||||| |||||||||  |||||||||||| || ||||| ||||||| | ||||||| ||||||    
T  34382675 cttatatttttaagataaattttttatttatagttttcttaatcattgccttaagggcactggttag 34382609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 171
Target Start/End: Complemental strand, 48282962 - 48282868
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 171  Q
    |||||| | ||| |||| |||||| |||  ||||||||  |||| | ||||| ||||||||||||||||||||| ||||  | ||||||||||||    
T  48282962 tgtaattattacctgataaaaagtgacagattatattttcaagacagaaattctatttatagattccttaaccagtgccccgggggcaccggtta 48282868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 20471391 - 20471330
Alignment:
Q  89 ttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||| |||||| |||  |||||||||||||| || |||| |||||||||||| ||||||||    
T  20471391 ttgataaaaagtgacagtttatatttctaagacaacaattatatttatagatttcttaacca 20471330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 20560146 - 20560207
Alignment:
Q  89 ttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||| |||||| |||  |||||||||||||| || |||| |||||||||||| ||||||||    
T  20560146 ttgataaaaagtgacagtttatatttctaagacaacaattatatttatagatttcttaacca 20560207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 150
Target Start/End: Complemental strand, 33827866 - 33827822
Alignment:
Q  107 ttatatttctaagata-aaaattttatttatagattccttaacca 150  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||    
T  33827866 ttatatttccaagacagaaaattttatttatagattccttaacca 33827822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 150
Target Start/End: Original strand, 33840099 - 33840143
Alignment:
Q  107 ttatatttctaagata-aaaattttatttatagattccttaacca 150  Q
    ||||||||| |||| | ||||||||||||||||||||||||||||    
T  33840099 ttatatttccaagacagaaaattttatttatagattccttaacca 33840143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 37494213 - 37494261
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaa 125  Q
    |||||||| ||||| ||||||| |||||||||||||||  |||||||||    
T  37494213 tgtaatcattactttatcaaaaataacatcttatattttcaagataaaa 37494261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 75 - 172
Target Start/End: Complemental strand, 6785867 - 6785770
Alignment:
Q  75 tgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 172  Q
    |||||||||| |||||||||||||||||||| ||||||||  |||| ||||||| ||||| |||| ||||||||||||||| ||||||||| ||||||    
T  6785867 tgtgtaatcattacttgatcaaaagtaacattttatattttcaagacaaaaattctatttgtagaatccttaaccattgccctgagggcactggttag 6785770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 155
Target Start/End: Original strand, 38359098 - 38359167
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    ||||| ||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38359098 tactttatcaaaattaacatcttatatttctaagataaaatttttatttatagattccttaaccattgcc 38359167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 34 - 165
Target Start/End: Complemental strand, 28709681 - 28709549
Alignment:
Q  34 attggttaagcattcaaaataagtaagttt-tcnnnnnnnnttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttat 132  Q
    |||||||||||||||||||||||||||||| |         |||| |||||| || ||||||||||||||||| ||||||||  ||||||||| || |||    
T  28709681 attggttaagcattcaaaataagtaagtttctataaaaaagttgtataatcattatttgatcaaaagtaacattttatattttcaagataaaatttctat 28709582  T
Q  133 ttatagattccttaaccattgccatgagggcac 165  Q
    |||||||||| |||||||||||| |||||||||    
T  28709581 ttatagattctttaaccattgccctgagggcac 28709549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 91 - 171
Target Start/End: Complemental strand, 42437773 - 42437693
Alignment:
Q  91 gatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 171  Q
    ||||||||||||||||||||| ||| ||||||||| || ||||| |||| ||||||||||||||| ||||||||| |||||    
T  42437773 gatcaaaagtaacatcttataattccaagataaaatttctatttgtagaatccttaaccattgccctgagggcactggtta 42437693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 15671188 - 15671110
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    |||||| | |||||||| |||||| |||  ||||||||| |||| ||||||||||||||||||||||||||||| ||||    
T  15671188 tgtaattattacttgataaaaagtgacagtttatatttcgaagacaaaaattttatttatagattccttaaccagtgcc 15671110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 148
Target Start/End: Original strand, 29032451 - 29032525
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaac 148  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||| |||| || | ||| |||| ||||||||    
T  29032451 ttgtgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttctgtttgtagaatccttaac 29032525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 635779 - 635674
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagg 173  Q
    ||||||||||| || || ||||||||||||||||||| | |  |||| |||| || ||||| |||||||||||||||||| |||||| |||  ||||||     
T  635779 ttgtgtaatcattatttaatcaaaagtaacatcttatttattcaagacaaaatttctatttgtagattccttaaccattgtcatgagagcaatggttagc 635680  T
Q  174 aagacc 179  Q
    ||||||    
T  635679 aagacc 635674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 55446771 - 55446852
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    ||||||||||| ||||| || ||||||||||||||||||||| |||| |||| |||||||| ||||||| |||  |||||||    
T  55446771 ttgtgtaatcattactttattaaaagtaacatcttatatttccaagacaaaatttttatttgtagattctttagtcattgcc 55446852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 48338852 - 48338928
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||||||| | ||||| ||||||| |||||||||||||||| ||||||||| || |||||||| |||| |||||||    
T  48338852 ttgtgtaataattactttatcaaaaataacatcttatatttccaagataaaatttctatttataaattctttaacca 48338928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 44698257 - 44698335
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    ||||||||||| || || |||||||||||||||||||||||  |||| |||| || ||||| |||||| ||||||||||    
T  44698257 ttgtgtaatcattattttatcaaaagtaacatcttatattttcaagacaaaatttctatttgtagatttcttaaccatt 44698335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 26613136 - 26613060
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 153  Q
    |||||| | |||||||| |||| |||||| |||||||||| ||| ||||  ||||||| ||||||||||||||||||    
T  26613136 tgtaattattacttgattaaaaataacattttatatttctgagacaaaacatttatttgtagattccttaaccattg 26613060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 4020137 - 4020216
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 153  Q
    ||||||||| | ||||| ||||||| |||||| ||||||||  |||| |||| || ||||| ||||||||||||||||||    
T  4020137 ttgtgtaataattacttaatcaaaattaacattttatattttcaagacaaaatttctatttgtagattccttaaccattg 4020216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 95 - 150
Target Start/End: Original strand, 49711004 - 49711059
Alignment:
Q  95 aaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    |||| |||||| |||||||||||||| | ||||| |||||||||||||||||||||    
T  49711004 aaaaataacattttatatttctaagacagaaattctatttatagattccttaacca 49711059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 179
Target Start/End: Original strand, 12373070 - 12373132
Alignment:
Q  117 aagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 179  Q
    ||||||||| || ||||| |||||||||||||||||||| |||||| || |||||| ||||||    
T  12373070 aagataaaatttatatttgtagattccttaaccattgccctgagggaactggttagcaagacc 12373132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 25958133 - 25958060
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaa 147  Q
    ||||||||||  ||||| ||||||||||||||||||||||| ||||| |||  |||||| | |||||| |||||    
T  25958133 ttgtgtaatcgttactttatcaaaagtaacatcttatatttttaagacaaattttttatatgtagatttcttaa 25958060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 107 - 147
Target Start/End: Complemental strand, 43652510 - 43652470
Alignment:
Q  107 ttatatttctaagataaaaattttatttatagattccttaa 147  Q
    ||||||||| |||||| ||||||||||||||||||||||||    
T  43652510 ttatatttccaagatagaaattttatttatagattccttaa 43652470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 171
Target Start/End: Original strand, 27144041 - 27144136
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagata-aaaattttatttatagattccttaaccattgccatgagggcaccggtta 171  Q
    |||||| | ||||| || |||||| |||  |||||||||||| | | |||||| |||||||||||| |||||||| ||||  ||||||||||||||    
T  27144041 tgtaattattacttaataaaaagtcacagtttatatttctaatacagaaaattctatttatagatttcttaaccagtgcctcgagggcaccggtta 27144136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 148
Target Start/End: Original strand, 27639554 - 27639609
Alignment:
Q  93 tcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaac 148  Q
    |||||||||| |||||||||||| ||||||||| || |||| || |||||||||||    
T  27639554 tcaaaagtaatatcttatatttcgaagataaaatttctattcatggattccttaac 27639609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 93 - 152
Target Start/End: Complemental strand, 48252326 - 48252267
Alignment:
Q  93 tcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    |||||||| | | |||||||||  ||||||||  ||||||||||||||||||||||||||    
T  48252326 tcaaaagtcaaaacttatattttcaagataaattttttatttatagattccttaaccatt 48252267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 148
Target Start/End: Original strand, 40460223 - 40460340
Alignment:
Q  32 gcattggttaagcattcaaaataagtaagttttcnnnnnnnn-ttgtgtaatcaatacttgatcaaaagtaa-catcttatatttctaagataaaaattt 129  Q
    |||||||||||| || ||||||||||||||||||         || |||||||| || || ||||||||||| ||||||||||||  || |||||| |||    
T  40460223 gcattggttaagaatacaaaataagtaagttttcatgaaaatattatgtaatcattattt-atcaaaagtaaacatcttatattttcaaaataaaatttt 40460321  T
Q  130 tatttatagattccttaac 148  Q
    ||||||||||||| |||||    
T  40460322 tatttatagattctttaac 40460340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 44291301 - 44291223
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    |||||| | ||||| || |||||| |||  ||||||||| |||| | ||||| ||||||||||||||||||||| ||||    
T  44291301 tgtaattattacttaataaaaagtgacagtttatatttccaagacagaaattctatttatagattccttaaccagtgcc 44291223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 50958899 - 50958997
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 172  Q
    ||||||||||| | ||||||||||| |||||| ||||||||| |||| |||| || |||||  | |||| |||| ||||||| | ||| ||| ||||||    
T  50958899 ttgtgtaatcatttcttgatcaaaaataacatgttatatttccaagacaaaatttctatttgaaaattctttaatcattgccctaaggacactggttag 50958997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 11676810 - 11676737
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaa 147  Q
    |||||| |||| || ||||||||||||||| |||| |||||  |||| |||| || ||||| ||||||||||||    
T  11676810 ttgtgttatcattatttgatcaaaagtaacgtcttttattttcaagacaaaatttatatttgtagattccttaa 11676737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 49261819 - 49261900
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    ||||||||| | ||||  |||||||||||||||||||||||  |||| |||| || ||||| || ||| |||||||| ||||    
T  49261819 ttgtgtaattattactctatcaaaagtaacatcttatatttacaagacaaaatttctatttgtatatttcttaaccagtgcc 49261900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 153
Target Start/End: Complemental strand, 1711979 - 1711919
Alignment:
Q  93 tcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 153  Q
    ||||| ||||||||||||||||  |||| |||| || || || ||||||||||||||||||    
T  1711979 tcaaatgtaacatcttatattttcaagacaaaatttataattttagattccttaaccattg 1711919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 8326178 - 8326254
Alignment:
Q  76 gtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    ||||||||| | |||||||||||||||||| |||||||| ||| | |||| || |||||  |||||  |||||||||    
T  8326178 gtgtaatcattgcttgatcaaaagtaacatattatatttttaaaacaaaatttctatttgaagatttattaaccatt 8326254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 30)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 98 - 179
Target Start/End: Original strand, 36087406 - 36087487
Alignment:
Q  98 agtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 179  Q
    |||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |||||||||  ||||| ||||||    
T  36087406 agtaacatcttatatttctaagataaaatttctatttgtagattccttaaccattgccctgagggcactagttagcaagacc 36087487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 18717889 - 18717965
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||| |||||| || ||||| || ||||||||||||    
T  18717889 ttgtgtaatcattacttgatcaaaagtaacatcttatatttttaaaataaaatttctatttgtaaattccttaacca 18717965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 4557629 - 4557716
Alignment:
Q  92 atcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 179  Q
    ||||||| |||| ||||||||||| ||||||||| || ||||| ||||||| |||||||||||| ||||||||||| |||| ||||||    
T  4557629 atcaaaaataacttcttatatttccaagataaaatttctatttgtagattctttaaccattgccctgagggcaccgcttagcaagacc 4557716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 74 - 165
Target Start/End: Complemental strand, 13738469 - 13738376
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaac--cattgccatgagggcac 165  Q
    ||||||||||| ||||| |||| ||||||||||||||||||  || | |||| ||||||||||||||||||||||  ||||||||||| |||||    
T  13738469 ttgtgtaatcattactttatcagaagtaacatcttatattttcaaaacaaaatttttatttatagattccttaaccacattgccatgacggcac 13738376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 74 - 153
Target Start/End: Original strand, 23453384 - 23453463
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 153  Q
    ||||||||||  || ||||||||||||||||||||||||||  |||| |||| |||||||| ||||||||||||| ||||    
T  23453384 ttgtgtaatctttatttgatcaaaagtaacatcttatattttcaagacaaaatttttatttgtagattccttaactattg 23453463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 91 - 153
Target Start/End: Complemental strand, 3689676 - 3689614
Alignment:
Q  91 gatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 153  Q
    ||||||||||||||||||||||||| ||||||||| || ||||| |||| |||||||||||||    
T  3689676 gatcaaaagtaacatcttatatttcaaagataaaatttctatttgtagaatccttaaccattg 3689614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 154
Target Start/End: Original strand, 8580505 - 8580631
Alignment:
Q  29 agggcattggttaagcattcaaaataagtaagttttcnnnnnnnnt-tgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaat 127  Q
    |||||||||||||||||| |||| ||||| |||||||        | ||| |||| | ||||| |||||||||||||||||||||||| |||| || |||    
T  8580505 agggcattggttaagcatccaaagtaagttagttttcatgaaaaatgtgtctaattattacttaatcaaaagtaacatcttatatttccaagacaacaat 8580604  T
Q  128 tttatttatagattccttaaccattgc 154  Q
    | |||||||||| || |||||||||||    
T  8580605 tctatttatagaatctttaaccattgc 8580631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 1870567 - 1870463
Alignment:
Q  75 tgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagga 174  Q
    |||||||| | ||||| ||||||||| | | |||||||||  |||| |||  || ||||||||| |||||||||||||||| ||||||||| |||||| |    
T  1870567 tgtgtaattattacttaatcaaaagtcaaagcttatattttcaagacaaattttctatttatagtttccttaaccattgccctgagggcactggttagca 1870468  T
Q  175 agacc 179  Q
    |||||    
T  1870467 agacc 1870463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 4978826 - 4978750
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||||||||| |||||||||||||||||||||||||||||  |||| |||| || |||| |||||||  |||||||    
T  4978826 ttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaacttctattaatagattttttaacca 4978750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 4996734 - 4996667
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagatt 141  Q
    ||||||||||| |||||||||||||||||||||||||||||  |||| |||| || |||| |||||||    
T  4996734 ttgtgtaatcattacttgatcaaaagtaacatcttatattttcaagacaaaacttctattaatagatt 4996667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 42251600 - 42251725
Alignment:
Q  29 agggcattggttaagcattcaaaataagtaagttttcnnnnnnnn-ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaat 127  Q
    |||||||||||||||||| ||||| |||||||||| |         ||||||||||| |   |||| |||| |||||| ||||||||||||||||||  |    
T  42251600 agggcattggttaagcatccaaaacaagtaagtttacatgaaaaagttgtgtaatcattgaatgataaaaaataacatgttatatttctaagataaattt 42251699  T
Q  128 tttatttatagattccttaaccattg 153  Q
    |||| ||| |||||||||||||||||    
T  42251700 tttacttagagattccttaaccattg 42251725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 162
Target Start/End: Complemental strand, 7932965 - 7932877
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgaggg 162  Q
    ||||| ||||| ||||| ||| ||||||| |||||| |||||||| | |||| || ||||| ||||||| |||| ||||||||||||||    
T  7932965 ttgtgcaatcattactttatccaaagtaaaatcttacatttctaaaacaaaatttctatttgtagattctttaatcattgccatgaggg 7932877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 90 - 170
Target Start/End: Original strand, 15923721 - 15923801
Alignment:
Q  90 tgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtt 170  Q
    ||||||||||||||||||||  ||||||| | |||| || ||||| ||||||| ||||| |||||| ||||||||| ||||    
T  15923721 tgatcaaaagtaacatcttacgtttctaaaacaaaatttctatttctagattctttaactattgccctgagggcactggtt 15923801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 152
Target Start/End: Original strand, 17641231 - 17641291
Alignment:
Q  92 atcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    |||||||||||||| ||||||||| || | |||  ||||||||||||||||||||||||||    
T  17641231 atcaaaagtaacattttatatttcaaaaacaaagtttttatttatagattccttaaccatt 17641291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 178
Target Start/End: Original strand, 40346747 - 40346851
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagg 173  Q
    ||||| ||||| || |||||||||| |||||||||||||||  || | |||| || ||| | ||||||||||||||||| |  |||| |||||||||||     
T  40346747 ttgtgcaatcattatttgatcaaaaataacatcttatattttcaatacaaaatttctatatgtagattccttaaccattactctgagagcaccggttagc 40346846  T
Q  174 aagac 178  Q
    |||||    
T  40346847 aagac 40346851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 188
Target Start/End: Complemental strand, 1004848 - 1004734
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagg 173  Q
    ||||||||||| || || ||||||||||| || ||||||||  |||| |||| || ||||| ||||||||||||||||| || |||||| || ||||||     
T  1004848 ttgtgtaatca-taatttatcaaaagtaatattttatattttcaagacaaaatttctatttgtagattccttaaccattaccctgagggtactggttagc 1004750  T
Q  174 aaga-cctaataatat 188  Q
    || | |||||||||||    
T  1004749 aaaaccctaataatat 1004734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 148
Target Start/End: Complemental strand, 29526375 - 29526301
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaac 148  Q
    ||||||||||| ||||| || |||| ||| || |||||||| |||||| ||| |||||||||||||||| |||||    
T  29526375 ttgtgtaatcattactttattaaaaataatattttatatttttaagattaaatttttatttatagattctttaac 29526301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 31904342 - 31904232
Alignment:
Q  29 agggcattggttaagcattcaaaataagtaagttttcnnnnnnnnttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaatt 128  Q
    |||||||||||||| |||  ||||||||||| ||||         ||||||||||| |||||||| |||| |||||| |||||||| ||||||||||  |    
T  31904342 agggcattggttaatcatctaaaataagtaaattttatgaaaaaattgtgtaatcattacttgattaaaaataacattttatatttttaagataaaatat 31904243  T
Q  129 ttatttataga 139  Q
    |||||| ||||    
T  31904242 ttatttgtaga 31904232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 92 - 154
Target Start/End: Original strand, 42850373 - 42850435
Alignment:
Q  92 atcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgc 154  Q
    ||||||| ||| |||||||||||  ||||||||| || ||||||||||||| |||||||||||    
T  42850373 atcaaaattaatatcttatatttacaagataaaatttctatttatagattctttaaccattgc 42850435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 40574217 - 40574136
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    ||||||||| | ||||  ||||||||| |||| ||||||||| |||| |||| || ||||| ||||||||||||||| ||||    
T  40574217 ttgtgtaattattactctatcaaaagttacattttatatttccaagacaaaatttctatttgtagattccttaaccagtgcc 40574136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 6315926 - 6315966
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatattt 114  Q
    ||||||||||| ||||||||||||| |||||||||||||||    
T  6315926 ttgtgtaatcattacttgatcaaaaataacatcttatattt 6315966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 180
Target Start/End: Original strand, 12695358 - 12695398
Alignment:
Q  140 ttccttaaccattgccatgagggcaccggttaggaagacct 180  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  12695358 ttccttaaccattgccctaagggcaccggttaggaagacct 12695398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 35 - 125
Target Start/End: Complemental strand, 28331368 - 28331277
Alignment:
Q  35 ttggttaagcattcaaaataagtaag-ttttcnnnnnnnnttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaa 125  Q
    |||||||||||||||||||||||||| ||||         ||||||||||| ||||||||||||| ||| || ||||||||| |||| ||||    
T  28331368 ttggttaagcattcaaaataagtaagtttttatgaaagagttgtgtaatcattacttgatcaaaaataatattttatatttccaagacaaaa 28331277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 125
Target Start/End: Original strand, 41436364 - 41436415
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaa 125  Q
    ||||||||||| || || ||||||| |||||||||||| |||||||||||||    
T  41436364 ttgtgtaatcattattttatcaaaaataacatcttatacttctaagataaaa 41436415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 29525658 - 29525724
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    ||||| ||||||||| | |  |||||||| | |||||||| ||||||||||||||| ||||||||||    
T  29525658 tacttaatcaaaagtcaaaatttatatttttgagataaaatttttatttatagatttcttaaccatt 29525724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 100 - 152
Target Start/End: Original strand, 7669194 - 7669246
Alignment:
Q  100 taacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    ||||||||||||||| ||||| |||| |||||||| || ||| ||||||||||    
T  7669194 taacatcttatatttttaagacaaaatttttatttttaaatttcttaaccatt 7669246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 171
Target Start/End: Original strand, 13717237 - 13717313
Alignment:
Q  95 aaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 171  Q
    |||| |||||| ||||||||  |||| |||| || ||||| || |||||||||| |||||  |||||||||||||||    
T  13717237 aaaaataacattttatattttcaagacaaaatttctatttgtatattccttaactattgctctgagggcaccggtta 13717313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 150
Target Start/End: Complemental strand, 18243330 - 18243302
Alignment:
Q  122 aaaaattttatttatagattccttaacca 150  Q
    |||||||||||||||||||||||||||||    
T  18243330 aaaaattttatttatagattccttaacca 18243302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 32909476 - 32909404
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacc 149  Q
    |||||| | ||||| ||||||||||| |||||||||||| |||| |||| || ||||| || ||| |||||||    
T  32909476 tgtaataattactttatcaaaagtaatatcttatatttccaagacaaaatttatatttgtatatttcttaacc 32909404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 153
Target Start/End: Complemental strand, 42551994 - 42551958
Alignment:
Q  117 aagataaaaattttatttatagattccttaaccattg 153  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  42551994 aagacaaaaattttatttgtagattccttaaccattg 42551958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 77 - 177
Target Start/End: Complemental strand, 31850819 - 31850719
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaag 176  Q
    |||||||| || || || |||||||||||||||||||||||||| |||| |||||||||| ||||  |||||||||||  |||||||||||||||| |||    
T  31850819 tgtaatcattattttattaaaagtaacatcttatatttctaagacaaaatttttatttatggattttttaaccattgctctgagggcaccggttagcaag 31850720  T
Q  177 a 177  Q
    |    
T  31850719 a 31850719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 19677035 - 19677139
Alignment:
Q  75 tgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagga 174  Q
    |||||||||| ||||| |||||||||||||||||||||||  |||| |||| || ||||| | ||||||||||||| |||| ||||||||  |||||| |    
T  19677035 tgtgtaatcattacttaatcaaaagtaacatcttatattttcaagacaaaatttctatttgtcgattccttaaccaatgccctgagggcattggttagca 19677134  T
Q  175 agacc 179  Q
    |||||    
T  19677135 agacc 19677139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 25530619 - 25530532
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagg 161  Q
    ||||||||||| ||||| |||||| ||||||| ||||||||||||||||||| || |||||| | |||| ||||||||| ||||||||    
T  25530619 ttgtgtaatcattactttatcaaatgtaacattttatatttctaagataaaatttctatttaaaaattctttaaccattaccatgagg 25530532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 171
Target Start/End: Complemental strand, 8896672 - 8896575
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 171  Q
    ||||||||||| ||| ||||||||||||||||||||||||| ||||| |||| || ||||| ||||||| |||| |||||   ||||||||| |||||    
T  8896672 ttgtgtaatcattacctgatcaaaagtaacatcttatatttttaagacaaaatttatatttgtagattctttaaacattgttgtgagggcactggtta 8896575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 162
Target Start/End: Original strand, 16685771 - 16685860
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaa-agtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgaggg 162  Q
    ||||||||||| |||||||||||| |||||||||||||||||| |||| |||| || ||||  ||||||||||||||| |||| ||||||    
T  16685771 ttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagacaaaacttctattagtagattccttaaccaatgccctgaggg 16685860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 162
Target Start/End: Original strand, 17660007 - 17660096
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaa-agtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgaggg 162  Q
    ||||||||||| |||||||||||| |||||||||||||||||| |||| |||| || ||||  ||||||||||||||| |||| ||||||    
T  17660007 ttgtgtaatcattacttgatcaaagagtaacatcttatatttcaaagacaaaacttctattagtagattccttaaccaatgccctgaggg 17660096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 42888342 - 42888420
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    ||||| ||||| ||||| |||||||| ||||||||||||||  ||| |||||| ||||||| |||||||||||||||||    
T  42888342 ttgtgcaatcattactttatcaaaagcaacatcttatattttcaagttaaaaaatttatttgtagattccttaaccatt 42888420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 86 - 178
Target Start/End: Original strand, 18756914 - 18757006
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagac 178  Q
    |||||||||||||||||||  || |||||  |||| |||| || ||||| |||||||||||| || |||||||||||||| |||||| |||||    
T  18756914 tacttgatcaaaagtaacacattttatttgcaagacaaaatttctatttgtagattccttaatcaatgccatgagggcactggttagcaagac 18757006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 154
Target Start/End: Original strand, 37928339 - 37928419
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgc 154  Q
    ||||||||| | ||||| ||||||| |||||| ||||||||  ||||||||| || ||||||||||||| |||||||||||    
T  37928339 ttgtgtaataattactttatcaaaaataacattttatattttcaagataaaatttatatttatagattctttaaccattgc 37928419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 85 - 150
Target Start/End: Complemental strand, 1554082 - 1554017
Alignment:
Q  85 atacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    |||||| ||| ||||||||||||||||||||||||| || | |||||||| ||||||| |||||||    
T  1554082 atactttatctaaagtaacatcttatatttctaagacaacatttttatttgtagattctttaacca 1554017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 12810221 - 12810116
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagg 173  Q
    ||||||||| | |||||  |||||||||| ||||||||||| ||||| |||| ||| |||||||||||| |||| |||| |  ||||| || |||||||     
T  12810221 ttgtgtaattattactttgtcaaaagtaatatcttatatttttaagacaaaattttcatttatagattcattaatcatttctctgaggacatcggttagc 12810122  T
Q  174 aagacc 179  Q
    ||||||    
T  12810121 aagacc 12810116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 89 - 152
Target Start/End: Complemental strand, 1309783 - 1309720
Alignment:
Q  89 ttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    ||||| ||||||||| | |||||||| |||||||||| || ||||| |||||||||||||||||    
T  1309783 ttgataaaaagtaacgtattatatttttaagataaaatttctatttgtagattccttaaccatt 1309720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 140 - 179
Target Start/End: Complemental strand, 16957654 - 16957615
Alignment:
Q  140 ttccttaaccattgccatgagggcaccggttaggaagacc 179  Q
    ||||||||||||||||||||||||||||||||| ||||||    
T  16957654 ttccttaaccattgccatgagggcaccggttagcaagacc 16957615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 172
Target Start/End: Original strand, 39386956 - 39387042
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 172  Q
    ||||||||||||||| | |  |||||||| || ||||||  |||||||||||| ||| ||||||||| || |||| |||||||||||    
T  39386956 tacttgatcaaaagttaaaatttatatttttaggataaattttttatttatagtttctttaaccattaccttgagagcaccggttag 39387042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 43118860 - 43118942
Alignment:
Q  89 ttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 171  Q
    ||||||||| ||||||||| ||||||  |||| |||| || ||||| |||||| ||||||||||||| ||  |||||||||||    
T  43118860 ttgatcaaatgtaacatctcatattttcaagacaaaatttatatttgtagatttcttaaccattgccctggaggcaccggtta 43118942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 77 - 114
Target Start/End: Complemental strand, 23080696 - 23080659
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatattt 114  Q
    |||||||| |||||||||||||||||||||||||||||    
T  23080696 tgtaatcattacttgatcaaaagtaacatcttatattt 23080659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 24937926 - 24937975
Alignment:
Q  130 tatttatagattccttaaccattgccatgagggcaccggttaggaagacc 179  Q
    ||||||||| |||||||||||||||| ||||||||| |||||| ||||||    
T  24937926 tatttatagtttccttaaccattgccctgagggcactggttagcaagacc 24937975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 31487784 - 31487680
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagg 173  Q
    ||||||||| | ||||| || |||| |||||||||||||||| ||||||||| || |||| ||| ||| | |||||| |||| |||| ||||  |||||     
T  31487784 ttgtgtaattattacttaataaaaaataacatcttatatttccaagataaaatttctattaataaattacctaaccaatgccctgagagcactagttagc 31487685  T
Q  174 aagac 178  Q
    |||||    
T  31487684 aagac 31487680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 90 - 141
Target Start/End: Original strand, 31249568 - 31249619
Alignment:
Q  90 tgatcaaaagtaacatcttatatttctaagataaaaattttatttatagatt 141  Q
    |||||||||||||||||||||||||  |||| |||| || ||||||||||||    
T  31249568 tgatcaaaagtaacatcttatattttcaagacaaaatttatatttatagatt 31249619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 34993146 - 34993091
Alignment:
Q  100 taacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    |||||||||||||||  |||| |||| || ||||| ||||||||||||||||||||    
T  34993146 taacatcttatattttcaagacaaaatttatatttgtagattccttaaccattgcc 34993091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 115
Target Start/End: Complemental strand, 23142726 - 23142685
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttc 115  Q
    ||||||||| | ||||||||||||| ||||||||||||||||    
T  23142726 ttgtgtaataattacttgatcaaaaataacatcttatatttc 23142685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 152
Target Start/End: Complemental strand, 41064367 - 41064297
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttct----aagataaaaattttatttatagattccttaaccatt 152  Q
    ||||||||||||||||||||||||||| | |    ||||||||| || |||||||| || |||||||||||    
T  41064367 tacttgatcaaaagtaacatcttatatatattttcaagataaaatttctatttataaatcccttaaccatt 41064297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 18221048 - 18220984
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||| |||||| ||||||||||||||||| |||  |||| || ||||  |||||||||||||||    
T  18221048 tacttaatcaaatgtaacatcttatatttccaagtcaaaacttctattagtagattccttaacca 18220984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 147
Target Start/End: Original strand, 21515059 - 21515131
Alignment:
Q  75 tgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaa 147  Q
    |||||||| | || ||||| |||||||||||||| |||||  | | ||||| || ||||||||||||||||||    
T  21515059 tgtgtaattattatttgattaaaagtaacatcttgtattttcatgttaaaatttctatttatagattccttaa 21515131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 149
Target Start/End: Complemental strand, 45907105 - 45907033
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacc 149  Q
    |||||| | |||||||| |||||| |||  ||||||||  |||| ||||| | ||||||||||||||||||||    
T  45907105 tgtaattattacttgataaaaagtgacagtttatatttacaagacaaaaaatctatttatagattccttaacc 45907033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 34)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 31861502 - 31861404
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 172  Q
    ||||||||||| |||||||||||||||||||||||||||||| || |||||| |||||| | || ||||||||| || | || ||||||||| ||||||    
T  31861502 ttgtgtaatcattacttgatcaaaagtaacatcttatatttccaaaataaaatttttatatgtaaattccttaatcaataccctgagggcactggttag 31861404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 153
Target Start/End: Complemental strand, 16341173 - 16341097
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 153  Q
    |||||||| ||||| |||||||||||||| ||||||||| |||| ||||||||||||| || |||||||||||||||    
T  16341173 tgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaattttatttgtaaattccttaaccattg 16341097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 165
Target Start/End: Original strand, 37183077 - 37183168
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcac 165  Q
    ||||||||||| ||||||||||||| |||||| |||||||| |||||||| | |||||||| || | ||||||| || ||||||||||||||    
T  37183077 ttgtgtaatcattacttgatcaaaaataacatattatatttataagataagatttttatttttataatccttaatcaatgccatgagggcac 37183168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 27284111 - 27284197
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgag 160  Q
    ||||| ||||| || ||||||||||||||||||||||||||| |||| |||| || ||| | |||||||||||||||||||| ||||    
T  27284111 ttgtgcaatcattatttgatcaaaagtaacatcttatatttccaagacaaaatttctatatgtagattccttaaccattgccctgag 27284197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 92 - 161
Target Start/End: Complemental strand, 31089572 - 31089503
Alignment:
Q  92 atcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagg 161  Q
    ||||||||||||||||||||||| | ||| |||| ||||||||||||||||||||| ||||||| |||||    
T  31089572 atcaaaagtaacatcttatattttttagacaaaatttttatttatagattccttaatcattgccctgagg 31089503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 172
Target Start/End: Complemental strand, 7437903 - 7437805
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 172  Q
    |||||||||||  ||||| ||||||||||||||||||||||| |||| | |  |||||||| | || || |||||||||||| |||||||||| |||||    
T  7437903 ttgtgtaatcatgacttgttcaaaagtaacatcttatatttccaagacacattttttatttgtggaatcgttaaccattgccttgagggcaccagttag 7437805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 2565485 - 2565412
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaa 147  Q
    ||||||||||| |||||||||||||||||||| |||| |||  ||||||||| || ||||||||||||| ||||    
T  2565485 ttgtgtaatcattacttgatcaaaagtaacattttatgttttcaagataaaatttatatttatagattctttaa 2565412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 12076502 - 12076397
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagg 173  Q
    |||||| |||| | ||||||||||| |||||||||||||||  |||| |||| ||||||||  |||||||||||||||| || |||||| || | ||||     
T  12076502 ttgtgtgatcattgcttgatcaaaattaacatcttatattttcaagacaaaatttttatttgaagattccttaaccattaccttgagggaactgattagc 12076403  T
Q  174 aagacc 179  Q
    ||||||    
T  12076402 aagacc 12076397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 12094997 - 12095102
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagg 173  Q
    ||||||||||| ||||| ||||||||||| |||||||||||  ||   |||| || ||||| ||||||||||||| ||||||  |||||||| ||||||     
T  12094997 ttgtgtaatcattactttatcaaaagtaatatcttatattttcaatgcaaaatttctatttgtagattccttaactattgccccgagggcactggttagc 12095096  T
Q  174 aagacc 179  Q
    ||||||    
T  12095097 aagacc 12095102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 2824890 - 2824814
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||||||||| |||||||||||||||||||||||||||| | |||| |||| |  ||||| |||| ||||||||||    
T  2824890 ttgtgtaatcattacttgatcaaaagtaacatcttatattcccaagacaaaagtgctatttgtagaatccttaacca 2824814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 89 - 152
Target Start/End: Original strand, 20775126 - 20775189
Alignment:
Q  89 ttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    |||||||||| ||| ||||||||||||||||| |||  |||||||||||||||| |||||||||    
T  20775126 ttgatcaaaaataatatcttatatttctaagacaaattttttatttatagattcattaaccatt 20775189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 179
Target Start/End: Complemental strand, 51100098 - 51099995
Alignment:
Q  76 gtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaa 175  Q
    ||||||| | ||||| ||||||||| | | |||||||||  || |||||  || |||||||||||||||||||||||||| |||||||||  ||||| ||    
T  51100098 gtgtaattattacttaatcaaaagttaaaacttatattttcaaaataaattttctatttatagattccttaaccattgccttgagggcactagttagaaa 51099999  T
Q  176 gacc 179  Q
    ||||    
T  51099998 gacc 51099995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 184
Target Start/End: Complemental strand, 52837341 - 52837228
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagta---acatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtt 170  Q
    ||||||||| | ||| ||||||||||||   |||| |||||| || ||||||||| || |||||||| ||||||||||||||| | ||| | ||||| ||    
T  52837341 ttgtgtaataattacgtgatcaaaagtagtaacattttatatgtccaagataaaatttctatttataaattccttaaccattgtcctgaagacaccgatt 52837242  T
Q  171 aggaagacctaata 184  Q
    || |||||||||||    
T  52837241 agcaagacctaata 52837228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 13967884 - 13967965
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    |||| |||||| |||||||| |||| |||||||||||||| | |||| |||| || ||||| ||||||||||||| ||||||    
T  13967884 ttgtataatcattacttgataaaaaataacatcttatattaccaagacaaaatttctatttgtagattccttaactattgcc 13967965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 22019642 - 22019718
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||||||||| ||||| ||  ||| |||||||||||||||  |||| |||| ||| ||||||||||||||||||||    
T  22019642 ttgtgtaatcattacttaatagaaaataacatcttatattttaaagacaaaattttcatttatagattccttaacca 22019718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 78 - 170
Target Start/End: Complemental strand, 22611967 - 22611875
Alignment:
Q  78 gtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtt 170  Q
    ||||||| ||||| ||| ||||||||||||||||||| ||||| |||| || ||||| |||||| ||||| ||||  | ||| ||||||||||    
T  22611967 gtaatcattactttatcgaaagtaacatcttatatttttaagacaaaatttatatttgtagatttcttaatcattatcctgaaggcaccggtt 22611875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 74 - 161
Target Start/End: Complemental strand, 31089858 - 31089772
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagg 161  Q
    ||||||||||| ||||| |||||||||||||| |||||||||  ||| |||| || ||||  |||||||||||| ||||||| |||||    
T  31089858 ttgtgtaatcattactttatcaaaagtaacat-ttatatttcctagacaaaatttctattggtagattccttaatcattgccctgagg 31089772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 77 - 144
Target Start/End: Original strand, 44190261 - 44190328
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattcct 144  Q
    |||||| | |||||||||||||||||||||||||||||  ||||||||| || ||||| || ||||||    
T  44190261 tgtaattattacttgatcaaaagtaacatcttatattttcaagataaaatttatatttgtatattcct 44190328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 2908229 - 2908180
Alignment:
Q  130 tatttatagattccttaaccattgccatgagggcaccggttaggaagacc 179  Q
    ||||||||| |||||||||||||||| ||||| |||||||||| ||||||    
T  2908229 tatttatagtttccttaaccattgccgtgaggacaccggttagtaagacc 2908180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 27133588 - 27133693
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagg 173  Q
    |||| |||||| ||||||| ||||| ||| |||||||||||| |||| |||  || |||||   |||||||||||||||| | |||||| || ||||||     
T  27133588 ttgtataatcattacttgaacaaaaataatatcttatatttcaaagacaaactttctatttggtgattccttaaccattgtcctgagggtactggttagc 27133687  T
Q  174 aagacc 179  Q
    ||||||    
T  27133688 aagacc 27133693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 75 - 152
Target Start/End: Original strand, 28176816 - 28176892
Alignment:
Q  75 tgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    |||||||||| || || ||||||| ||| |||||||||||||||||||||| || ||||| || ||| ||||||||||    
T  28176816 tgtgtaatcattattttatcaaaa-taatatcttatatttctaagataaaatttctatttgtaaatttcttaaccatt 28176892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 39810777 - 39810696
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    ||||||||| | |||||||||||||||||||||||||||||  ||||||    ||||| || |||| || ||||||||||||    
T  39810777 ttgtgtaattattacttgatcaaaagtaacatcttatattttcaagatattttttttaattgtagaatcattaaccattgcc 39810696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 150
Target Start/End: Original strand, 47397659 - 47397720
Alignment:
Q  89 ttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||| |||||| |||  |||||||||||| ||| ||||| |||||||||||||||||||||    
T  47397659 ttgataaaaagtgacagtttatatttctaaaatagaaattctatttatagattccttaacca 47397720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 19480576 - 19480616
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatattt 114  Q
    ||||||||||| ||||| |||||||||||||||||||||||    
T  19480576 ttgtgtaatcattactttatcaaaagtaacatcttatattt 19480616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 123 - 171
Target Start/End: Complemental strand, 38319565 - 38319517
Alignment:
Q  123 aaaattttatttatagattccttaaccattgccatgagggcaccggtta 171  Q
    |||||| ||||||||||||||||||||| ||||||| ||||||| ||||    
T  38319565 aaaattctatttatagattccttaaccaatgccatgggggcaccagtta 38319517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 78 - 152
Target Start/End: Original strand, 28740328 - 28740403
Alignment:
Q  78 gtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttataga-ttccttaaccatt 152  Q
    ||||||| ||||| ||||||| || ||||||||||||  ||||||||| || |||||||| | |||||||||||||    
T  28740328 gtaatcattactttatcaaaaatatcatcttatattttcaagataaaatttatatttatatacttccttaaccatt 28740403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 182
Target Start/End: Original strand, 34236272 - 34236327
Alignment:
Q  127 ttttatttatagattccttaaccattgccatgagggcaccggttaggaagacctaa 182  Q
    |||||||||||| ||| ||||||||||  |||||||||| |||||| |||||||||    
T  34236272 ttttatttatagtttctttaaccattgttatgagggcactggttagcaagacctaa 34236327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 86 - 145
Target Start/End: Complemental strand, 37431844 - 37431785
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattcctt 145  Q
    ||||| || ||||||||||||||||| || |||||||||| |||||||| || |||||||    
T  37431844 tacttaattaaaagtaacatcttataattttaagataaaatttttatttgtaaattcctt 37431785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 113
Target Start/End: Original strand, 44639907 - 44639946
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatt 113  Q
    ||||||||||| ||||| ||||||||||||||||||||||    
T  44639907 ttgtgtaatcattacttaatcaaaagtaacatcttatatt 44639946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 48419112 - 48419215
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagg 173  Q
    ||||| ||||| ||||| |||||||||||  | ||| ||||| || | |||| || ||||| ||||||||||||||| |||| ||||||||  ||||||     
T  48419112 ttgtgcaatcattactttatcaaaagtaaagttttacatttccaaaacaaaatttctatttgtagattccttaaccactgccctgagggcattggttagc 48419211  T
Q  174 aaga 177  Q
    ||||    
T  48419212 aaga 48419215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 127 - 181
Target Start/End: Complemental strand, 35808369 - 35808315
Alignment:
Q  127 ttttatttatagattccttaaccattgccatgagggcaccggttaggaagaccta 181  Q
    |||||||||||| ||||||||||||||   ||||||||| |||||| ||||||||    
T  35808369 ttttatttatagtttccttaaccattgatgtgagggcactggttagcaagaccta 35808315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 155
Target Start/End: Complemental strand, 42595258 - 42595177
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    ||||||||||| ||||| |||||||||||||| ||||||||  || | |||  || |||| |||||||| ||||| ||||||    
T  42595258 ttgtgtaatcattactttatcaaaagtaacattttatattttcaaaacaaattttatattcatagattctttaactattgcc 42595177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 74 - 147
Target Start/End: Complemental strand, 43970120 - 43970047
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaa 147  Q
    ||||||||| | ||| | || |||||||||||||||||||| |||||||||| || ||||  || |||||||||    
T  43970120 ttgtgtaattattacataattaaaagtaacatcttatatttttaagataaaatttatattcgtatattccttaa 43970047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 106 - 179
Target Start/End: Original strand, 53145200 - 53145273
Alignment:
Q  106 cttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 179  Q
    |||||||||  | ||||||  |||||||||||| |||||||||||||| | |||||||||  ||||| ||||||    
T  53145200 cttatattttcatgataaattttttatttatagtttccttaaccattgtcttgagggcactagttagcaagacc 53145273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0079 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0079
Description:

Target: scaffold0079; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 77 - 153
Target Start/End: Original strand, 51688 - 51764
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 153  Q
    |||||||| ||||| |||||||||||||| ||||||||| |||| ||||||||||||| || |||||||||||||||    
T  51688 tgtaatcattacttaatcaaaagtaacattttatatttcaaagacaaaaattttatttgtaaattccttaaccattg 51764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 46; Significance: 3e-17; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 179
Target Start/End: Complemental strand, 19320345 - 19320240
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagg 173  Q
    ||||||||||  ||||| |||||||||||||| ||||||||  |||| ||||| ||||||| |||||||||||| |||| || |||||||||  |||||     
T  19320345 ttgtgtaatcgttactttatcaaaagtaacattttatatttgcaagacaaaaaatttatttgtagattccttaatcattaccttgagggcactagttagc 19320246  T
Q  174 aagacc 179  Q
    ||||||    
T  19320245 aagacc 19320240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 92 - 179
Target Start/End: Original strand, 227392 - 227479
Alignment:
Q  92 atcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 179  Q
    |||||||||||||||||||||||  || | |||| || |||||||||||||||||||||||||| | ||| ||| |||||| ||||||    
T  227392 atcaaaagtaacatcttatattttcaaaaaaaaatttctatttatagattccttaaccattgccctaaggacactggttagcaagacc 227479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 89 - 148
Target Start/End: Complemental strand, 5611188 - 5611129
Alignment:
Q  89 ttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaac 148  Q
    ||||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||    
T  5611188 ttgattaaaagtaacatcttatatttctaagacaaaatttctatttatagattccttaac 5611129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 75 - 179
Target Start/End: Complemental strand, 17454046 - 17453942
Alignment:
Q  75 tgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagga 174  Q
    |||||||| | ||| |||||||||||||||||||||||||  || |||||| ||| ||||||| | || ||||||| |||| ||| ||||| |||||| |    
T  17454046 tgtgtaattattacgtgatcaaaagtaacatcttatattttcaaaataaaattttcatttataaaatcgttaaccaatgccctgaaggcactggttagca 17453947  T
Q  175 agacc 179  Q
    |||||    
T  17453946 agacc 17453942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 29 - 153
Target Start/End: Original strand, 32134039 - 32134164
Alignment:
Q  29 agggcattggttaagcattcaaaataagtaagttttcnnnnnnnn-ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaat 127  Q
    ||||||||||||||||||  |||||||||||||||||         ||||||||||| |||||||| |||| ||||||||||||||   || | |||| |    
T  32134039 agggcattggttaagcatctaaaataagtaagttttcttgaaaaagttgtgtaatcattacttgataaaaaataacatcttatattctcaaaacaaaatt 32134138  T
Q  128 tttatttatagattccttaaccattg 153  Q
    | ||||| ||||||||||||| ||||    
T  32134139 tctatttgtagattccttaactattg 32134164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 147
Target Start/End: Complemental strand, 17345913 - 17345843
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaa 147  Q
    |||||||  |||||||||||||||||||| |||||||| ||| | |||| |||||||| | ||||||||||    
T  17345913 tgtaatcgctacttgatcaaaagtaacattttatatttttaaaacaaaatttttatttgttgattccttaa 17345843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 179
Target Start/End: Original strand, 2470390 - 2470495
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttagg 173  Q
    |||| |||||| ||||||| ||||| ||| |||||||||||| |||| |||  || |||||   |||||||||||||||| | |||||| || ||||||     
T  2470390 ttgtataatcattacttgaacaaaaataatatcttatatttcaaagacaaactttctatttggtgattccttaaccattgtcctgagggtactggttagc 2470489  T
Q  174 aagacc 179  Q
    ||||||    
T  2470490 aagacc 2470495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 86 - 150
Target Start/End: Complemental strand, 21809868 - 21809804
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    |||||||| |||||| |||  |||||||||||||| || |||| |||||||||||| ||||||||    
T  21809868 tacttgataaaaagtgacaatttatatttctaagacaacaattctatttatagatttcttaacca 21809804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 104 - 179
Target Start/End: Original strand, 31223253 - 31223328
Alignment:
Q  104 atcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 179  Q
    |||||||||||| |||| |||| |||||||| ||||||| ||||||| |||| ||  ||||||| |||| ||||||    
T  31223253 atcttatatttccaagacaaaatttttatttgtagattcattaaccaatgccttggtggcaccgattagcaagacc 31223328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 106 - 165
Target Start/End: Original strand, 32800276 - 32800335
Alignment:
Q  106 cttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcac 165  Q
    ||||||||| ||||| |||  || ||||||||| |||||||||||||| |||||||||||    
T  32800276 cttatatttttaagacaaattttctatttatagtttccttaaccattgtcatgagggcac 32800335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 155
Target Start/End: Original strand, 17506308 - 17506386
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    |||||| | |||||||| |||||| |||  ||||||||| || ||| ||||| |||||||||||| |||||||| ||||    
T  17506308 tgtaattattacttgataaaaagtgacagtttatatttccaaaatataaattatatttatagatttcttaaccagtgcc 17506386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 152
Target Start/End: Complemental strand, 33121385 - 33121307
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    ||||||||||| |  ||||| |||| |||||||||||||||  |||| |||||||||||||  | ||| ||||||||||    
T  33121385 ttgtgtaatcattgtttgataaaaaataacatcttatattttcaagacaaaaattttatttgaaaatttcttaaccatt 33121307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 178
Target Start/End: Original strand, 2398050 - 2398150
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaag 176  Q
    |||||| | ||||| ||||||||| | | |||||||||  ||||||||  || |||||||||||||||||| |||| || ||||  |||||||||| |||    
T  2398050 tgtaattattacttaatcaaaagtcaaaacttatattttcaagataaattttctatttatagattccttaatcatttcc-tgagaacaccggttagcaag 2398148  T
Q  177 ac 178  Q
    ||    
T  2398149 ac 2398150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 86 - 179
Target Start/End: Complemental strand, 17835038 - 17834945
Alignment:
Q  86 tacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 179  Q
    ||||| ||||||||||| |||||||||||| |||| || | |  ||||| |||| |||||||||| ||||  ||||| || |||||| ||||||    
T  17835038 tacttaatcaaaagtaatatcttatatttcaaagacaatattgctatttgtagaatccttaaccaatgccccgagggtactggttagcaagacc 17834945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 79 - 155
Target Start/End: Complemental strand, 2911536 - 2911460
Alignment:
Q  79 taatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    |||||| |||||||||||| ||||||||||| ||||  |||| |||| || || || || |||| ||||||||||||    
T  2911536 taatcattacttgatcaaatgtaacatcttacattttcaagacaaaacttctacttttaaattctttaaccattgcc 2911460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 107 - 179
Target Start/End: Original strand, 6770906 - 6770978
Alignment:
Q  107 ttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 179  Q
    ||||||||  ||||||||  || ||||||||| ||||||||||| |||| | ||||||| |||||| ||||||    
T  6770906 ttatattttcaagataaattttctatttatagtttccttaaccaatgccctaagggcactggttagcaagacc 6770978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 77 - 125
Target Start/End: Original strand, 18493285 - 18493333
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaa 125  Q
    |||||| | |||||||||||||||||||| ||||||||  |||||||||    
T  18493285 tgtaataattacttgatcaaaagtaacattttatattttcaagataaaa 18493333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 75 - 172
Target Start/End: Original strand, 11815951 - 11816048
Alignment:
Q  75 tgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 172  Q
    |||||||||| ||||| |||||||||||||||||||||||  |||| |||| || ||||| ||||||| |||||||||| | |||| |||| ||||||    
T  11815951 tgtgtaatcattactttatcaaaagtaacatcttatattttcaagacaaaatttctatttttagattcattaaccattgtcctgagagcactggttag 11816048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 30293894 - 30293821
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    |||||||| ||||||||||||||||||||||||||||| ||||| |||| || ||||| ||||||| |||||||    
T  30293894 tgtaatcattacttgatcaaaagtaacatcttatatttttaagacaaaatttctatttgtagattctttaacca 30293821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 77 - 152
Target Start/End: Original strand, 11320167 - 11320242
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    |||||| | |||||||| |||||| |||  |||||||||||||||| |||||||| ||||||||||||||||||||    
T  11320167 tgtaattattacttgataaaaagtgacagtttatatttctaagatagaaattttaattatagattccttaaccatt 11320242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 31 - 114
Target Start/End: Complemental strand, 30840715 - 30840632
Alignment:
Q  31 ggcattggttaagcattcaaaataagtaagttttcnnnnnnnnttgtgtaatcaatacttgatcaaaagtaacatcttatattt 114  Q
    ||||||| |||||||| ||||| ||||||||||||        ||||||||||| |||||||||||||||||||||||||||||    
T  30840715 ggcattgattaagcatccaaaacaagtaagttttcaaaaaaagttgtgtaatcattacttgatcaaaagtaacatcttatattt 30840632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 74 - 171
Target Start/End: Original strand, 6646327 - 6646424
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 171  Q
    ||||||||||| ||| | |||||||||||||| ||||||||| || ||||||||||||||| || |||  |||| ||||||  | |||||||||||||    
T  6646327 ttgtgtaatcattacattatcaaaagtaacatattatatttcaaatataaaaattttatttgtatattatttaatcattgctctaagggcaccggtta 6646424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 153
Target Start/End: Complemental strand, 14044754 - 14044677
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattg 153  Q
    ||||||||| | ||||||||||||||||| |||||||||||| |||| ||||| ||||||| ||||||||||||| ||||    
T  14044754 ttgtgtaataattacttgatcaaaagtaatatcttatatttc-aaga-aaaaaatttatttgtagattccttaacaattg 14044677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 155
Target Start/End: Original strand, 27544628 - 27544709
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgcc 155  Q
    ||||||||||| ||| |||| |||| |||||||||||||||  ||||||||| || ||||| |||||||||||  |||||||    
T  27544628 ttgtgtaatcattacatgataaaaaataacatcttatattttcaagataaaatttctatttgtagattccttagtcattgcc 27544709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 34346951 - 34347032
Alignment:
Q  104 atcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaagacctaataa 185  Q
    |||||||||||  |||| |||  |||||||| ||||||||||||||||||| |||||| ||| |||||| |||||| |||||    
T  34346951 atcttatattttcaagacaaattttttatttgtagattccttaaccattgctatgaggacactggttagtaagacccaataa 34347032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 74 - 167
Target Start/End: Original strand, 41645071 - 41645164
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccg 167  Q
    ||||||||||| |||||||| |||| ||| |||||||||||   ||| |||| |||||||||||||||| ||||||| |||  ||||| |||||    
T  41645071 ttgtgtaatcattacttgataaaaaataatatcttatattttctagacaaaatttttatttatagattctttaaccaatgctctgaggacaccg 41645164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 127 - 179
Target Start/End: Original strand, 5471317 - 5471369
Alignment:
Q  127 ttttatttatagattccttaaccattgccatgagggcaccggttaggaagacc 179  Q
    |||||||||||| || ||||||||||||| |||||||||||||||| ||||||    
T  5471317 ttttatttatagttttcttaaccattgccctgagggcaccggttagcaagacc 5471369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 179
Target Start/End: Original strand, 6102870 - 6102972
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttaggaag 176  Q
    |||||| | ||||| ||||||||| | | |||||||||  |||| |||  || |||||||||||||||||||||||||| | || |||| |||||| |||    
T  6102870 tgtaattattacttaatcaaaagtcaaaacttatattttgaagacaaattttctatttatagattccttaaccattgccctaagtgcactggttagcaag 6102969  T
Q  177 acc 179  Q
    |||    
T  6102970 acc 6102972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 85 - 171
Target Start/End: Complemental strand, 8151858 - 8151772
Alignment:
Q  85 atacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 171  Q
    ||||||||| ||||||||||||||||||||  || | |||| || || ||||| ||||||||||||| ||| |||| |||| |||||    
T  8151858 atacttgattaaaagtaacatcttatattttcaaaacaaaatttctacttataaattccttaaccatggccctgagagcactggtta 8151772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 74 - 152
Target Start/End: Original strand, 36482090 - 36482168
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccatt 152  Q
    |||||||| || || ||||||||||||||||||||||||||  || | |||| || ||||| ||||||| |||||||||    
T  36482090 ttgtgtaaacattatttgatcaaaagtaacatcttatattttcaaaacaaaatttctatttgtagattcattaaccatt 36482168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 93 - 150
Target Start/End: Complemental strand, 1920801 - 1920744
Alignment:
Q  93 tcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    |||||||||||| ||||||||||||||| |||| || |||| ||||||| ||||||||    
T  1920801 tcaaaagtaacaccttatatttctaagacaaaatttctattcatagatttcttaacca 1920744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 131
Target Start/End: Complemental strand, 2089190 - 2089133
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaatttta 131  Q
    ||||||||| | || |||||||||||||| |||||||||||| |||| ||||||||||    
T  2089190 ttgtgtaataattatttgatcaaaagtaaaatcttatatttccaagacaaaaatttta 2089133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 3600181 - 3600246
Alignment:
Q  106 cttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggtta 171  Q
    |||||||||  |||| ||| ||||||||||||| || ||||||||||||| |||| ||||||||||    
T  3600181 cttatattttcaagacaaatattttatttatagttttcttaaccattgccctgagagcaccggtta 3600246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 89 - 154
Target Start/End: Original strand, 22294038 - 22294103
Alignment:
Q  89 ttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgc 154  Q
    ||||||||||  || |||||||||||| |||| |||| || ||||| |||||||||||||||||||    
T  22294038 ttgatcaaaaccaatatcttatatttccaagacaaaatttctatttgtagattccttaaccattgc 22294103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 95 - 148
Target Start/End: Complemental strand, 35579394 - 35579341
Alignment:
Q  95 aaaagtaacatcttatatttctaagataaaaattttatttatagattccttaac 148  Q
    ||||||||||| ||||||||| |||| |||||||||||||||| ||||| ||||    
T  35579394 aaaagtaacattttatatttcaaagacaaaaattttatttataaattccctaac 35579341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 77 - 155
Target Start/End: Complemental strand, 2611220 - 2611141
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattt-tatttatagattccttaaccattgcc 155  Q
    |||||| | ||||| || |||||| ||| |||||||||| |||| | |||||| ||||||||||||||||||||| ||||    
T  2611220 tgtaattattacttaataaaaagtgacagcttatatttccaagacataaatttctatttatagattccttaaccagtgcc 2611141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 95 - 141
Target Start/End: Original strand, 8405821 - 8405867
Alignment:
Q  95 aaaagtaacatcttatatttctaagataaaaattttatttatagatt 141  Q
    |||||||| | ||||||||| |||||||||||||||||| |||||||    
T  8405821 aaaagtaaaaacttatatttttaagataaaaattttattaatagatt 8405867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 89 - 150
Target Start/End: Complemental strand, 3360736 - 3360675
Alignment:
Q  89 ttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||||||||||||   |||||||||| || | |||| |||||||||| |||||||||||||    
T  3360736 ttgatcaaaagtaattccttatatttccaacacaaaatttttatttatggattccttaacca 3360675  T

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Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 148
Target Start/End: Original strand, 18242479 - 18242552
Alignment:
Q  75 tgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaac 148  Q
    |||||||||| |||| ||||||||||  ||||||||||||  |||| |||| || || || |||||||||||||    
T  18242479 tgtgtaatcattactagatcaaaagtcgcatcttatattttcaagacaaaatttctacttgtagattccttaac 18242552  T

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Target: chr5; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 150
Target Start/End: Complemental strand, 21052699 - 21052626
Alignment:
Q  77 tgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    |||||| | |||||||| |||||| |||  ||||||||  |||||  |||||||||||||| ||||||||||||    
T  21052699 tgtaattattacttgataaaaagtgacagtttatatttgcaagatggaaattttatttataaattccttaacca 21052626  T

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Target: scaffold0204 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: scaffold0204
Description:

Target: scaffold0204; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 34 - 177
Target Start/End: Complemental strand, 15481 - 15337
Alignment:
Q  34 attggttaagcattcaaaataagtaagttttcnnnnnnnnt-tgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttat 132  Q
    ||||||||| |||||||||||||||||||||         | ||| |||||  |||||| ||||||||||||||||||||||  |||| ||||||| |||    
T  15481 attggttaaacattcaaaataagtaagtttttatgaaaaatgtgtataatcgttacttggtcaaaagtaacatcttatattttcaagacaaaaattctat 15382  T
Q  133 ttatagattccttaaccattgccatgagggcaccggttaggaaga 177  Q
    ||||| ||||||||| ||||  | |||| |||| |||||| ||||    
T  15381 ttataaattccttaatcattatcctgagagcactggttagcaaga 15337  T

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Target: scaffold0283 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0283
Description:

Target: scaffold0283; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 141
Target Start/End: Original strand, 3364 - 3431
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagatt 141  Q
    |||| |||||||||||| |||||||||||||| ||||||||  |||| |||| |||||||||||||||    
T  3364 ttgtataatcaatactttatcaaaagtaacattttatattttcaagacaaaatttttatttatagatt 3431  T

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Target: scaffold0299 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0299
Description:

Target: scaffold0299; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 18090 - 18014
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacca 150  Q
    ||||||||| | ||||| ||||||||| | | ||||||||| |||||||||  || ||||||||| |||||||||||    
T  18090 ttgtgtaattattacttaatcaaaagtcaaaacttatatttttaagataaattttctatttatagtttccttaacca 18014  T

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Target: scaffold0002 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 154
Target Start/End: Original strand, 120728 - 120788
Alignment:
Q  94 caaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgc 154  Q
    ||||||| |||||||||||||  |||| |||| || ||||| |||||||||||||||||||    
T  120728 caaaagtgacatcttatattttcaagacaaaatttctatttgtagattccttaaccattgc 120788  T

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Target: scaffold0036 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 74 - 172
Target Start/End: Original strand, 36571 - 36669
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaaccattgccatgagggcaccggttag 172  Q
    |||| |||||| || || |||||||||||||||||||||||  || | |||| ||||||||  |||||| |||| |||| || | | ||||||||||||    
T  36571 ttgtataatcattatttaatcaaaagtaacatcttatattttcaaaacaaaatttttatttgaagattctttaatcattaccttaaaggcaccggttag 36669  T

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Target: scaffold1372 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold1372
Description:

Target: scaffold1372; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 89 - 149
Target Start/End: Complemental strand, 1330 - 1270
Alignment:
Q  89 ttgatcaaaagtaacatcttatatttctaagataaaaattttatttatagattccttaacc 149  Q
    ||||| |||||| |||  ||||||||| |||| | ||||| ||||||||||||||||||||    
T  1330 ttgataaaaagtgacagtttatatttccaagacagaaattctatttatagattccttaacc 1270  T

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Target: scaffold0329 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0329
Description:

Target: scaffold0329; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 114
Target Start/End: Original strand, 7398 - 7438
Alignment:
Q  74 ttgtgtaatcaatacttgatcaaaagtaacatcttatattt 114  Q
    ||||||||||| || |||||||||||||| |||||||||||    
T  7398 ttgtgtaatcattatttgatcaaaagtaatatcttatattt 7438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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