View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_79 (Length: 336)
Name: NF0836_low_79
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_79 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 103 - 336
Target Start/End: Original strand, 40180848 - 40181081
Alignment:
| Q |
103 |
aatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagattatgaggtggtgtttcaacaa |
202 |
Q |
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| T |
40180848 |
aatacaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaattctacaaagtggataagattataaggtggtgtttcaacaa |
40180947 |
T |
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| Q |
203 |
atttagtttgacaagaggttttaataattttgagtaaaaaatgttgttgatggtgacgaggagtggcaaagtccatgaatttgatagctgatttaatttg |
302 |
Q |
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| T |
40180948 |
atttagtttgacaagaggttttaataactttgagtaaaaaatgttgttgatggtgacgaggagtggcaaagtccatgaattcaatagctgatttaatttt |
40181047 |
T |
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| Q |
303 |
gtacctatagtcacggaaaacaggaacgttactg |
336 |
Q |
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| T |
40181048 |
gtacctatagtcacggaaaacaggaacgtcactg |
40181081 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 254
Target Start/End: Original strand, 38605414 - 38605462
Alignment:
| Q |
206 |
tagtttgacaagaggttttaataattttgagtaaaaaatgttgttgatg |
254 |
Q |
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| T |
38605414 |
tagtttgacaggaggtttcaataattttgagtagaaaatgtggttgatg |
38605462 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 106 - 254
Target Start/End: Complemental strand, 46358978 - 46358821
Alignment:
| Q |
106 |
acaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagattatgagg---------tggtgttt |
196 |
Q |
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| T |
46358978 |
acaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggctt |
46358879 |
T |
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| Q |
197 |
caacaaatttagtttgacaagaggttttaataattttgagtaaaaaatgttgttgatg |
254 |
Q |
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| T |
46358878 |
caacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgatg |
46358821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 251
Target Start/End: Complemental strand, 44459407 - 44459253
Alignment:
| Q |
106 |
acaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagattatgagg---------tggtgttt |
196 |
Q |
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| T |
44459407 |
acaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggctt |
44459308 |
T |
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| Q |
197 |
caacaaatttagtttgacaagaggttttaataattttgagtaaaaaatgttgttg |
251 |
Q |
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| T |
44459307 |
caacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttg |
44459253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 251
Target Start/End: Complemental strand, 44466940 - 44466786
Alignment:
| Q |
106 |
acaagggattccagaacaggggtagtgatgagattcttattattcttccaaaccaactctacaaagcggataagattatgagg---------tggtgttt |
196 |
Q |
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| T |
44466940 |
acaagggattccagaacaggggtagtgatgaggtccttgttattcttccaaaccaactttataaagttgataagattatgaggttgaacctttggggctt |
44466841 |
T |
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| Q |
197 |
caacaaatttagtttgacaagaggttttaataattttgagtaaaaaatgttgttg |
251 |
Q |
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| T |
44466840 |
caacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttg |
44466786 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 44460109 - 44460076
Alignment:
| Q |
106 |
acaagggattccagaacaggggtagtgatgagat |
139 |
Q |
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| T |
44460109 |
acaagggattccagaacaggggtagtgatgagat |
44460076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 139
Target Start/End: Complemental strand, 44467642 - 44467609
Alignment:
| Q |
106 |
acaagggattccagaacaggggtagtgatgagat |
139 |
Q |
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| T |
44467642 |
acaagggattccagaacaggggtagtgatgagat |
44467609 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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