View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0836_low_8 (Length: 730)

Name: NF0836_low_8
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0836_low_8
NF0836_low_8
[»] chr5 (24 HSPs)
chr5 (16-699)||(10764534-10765217)
chr5 (16-358)||(10563134-10563458)
chr5 (408-687)||(10563543-10563822)
chr5 (409-693)||(10610227-10610511)
chr5 (410-699)||(7191523-7191812)
chr5 (494-678)||(10748438-10748622)
chr5 (497-612)||(10603358-10603473)
chr5 (24-122)||(10749011-10749109)
chr5 (539-615)||(10218232-10218308)
chr5 (407-687)||(10742113-10742396)
chr5 (16-186)||(10742634-10742804)
chr5 (194-355)||(10609977-10610138)
chr5 (485-570)||(10718429-10718514)
chr5 (301-353)||(10748798-10748850)
chr5 (35-186)||(11049804-11049955)
chr5 (500-602)||(10579615-10579717)
chr5 (500-602)||(10589926-10590028)
chr5 (16-122)||(10609817-10609923)
chr5 (497-597)||(10599693-10599793)
chr5 (497-615)||(9837814-9837932)
chr5 (231-353)||(10718681-10718803)
chr5 (416-456)||(10653847-10653887)
chr5 (238-282)||(11049719-11049763)
chr5 (244-282)||(10549110-10549148)
[»] chr2 (2 HSPs)
chr2 (390-699)||(17924805-17925117)
chr2 (244-357)||(17925185-17925298)
[»] chr6 (11 HSPs)
chr6 (406-687)||(12930790-12931074)
chr6 (390-699)||(12956576-12956888)
chr6 (390-699)||(12905685-12905997)
chr6 (405-699)||(12947154-12947451)
chr6 (390-699)||(12898063-12898377)
chr6 (244-358)||(12956395-12956509)
chr6 (244-372)||(12946958-12947086)
chr6 (244-357)||(12905503-12905617)
chr6 (244-357)||(12897882-12897995)
chr6 (250-357)||(12930599-12930706)
chr6 (85-122)||(12930452-12930489)


Alignment Details
Target: chr5 (Bit Score: 668; Significance: 0; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 668; E-Value: 0
Query Start/End: Original strand, 16 - 699
Target Start/End: Complemental strand, 10765217 - 10764534
Alignment:
Q  16 attcctataaacttgacgtattgctccaatctcatagacttgattttgggagggaacaaattgacagggaaaatactaattgaaattggctctttgaaaa 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10765217 attcctataaacttgacgtattgctccaatctcatagacttgattttgggagggaacaaattgacagggaaaatactaattgaaattggctctttgaaaa 10765118  T
Q  116 accttcattcattcgcccttttcggtaacaatttaaatggagggatcccttcatccttcgggaatctttcatccttcaggaatttttcatccttaatgcg 215  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  10765117 accttcattcattcgcccttttcggtaacaatttaaatggagggatcccttcatccttcaggaatctttcatccttcaggaatctttcatccttaatgcg 10765018  T
Q  216 ttttacgtgtgcttctaacaaattaggaggagatattccacaagaaatatgtcgcctcaaaatcttgacatttttatcttttggcgagaacaatttgtct 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  10765017 ttttacgtgtgcttctaacaaattaggaggagatattccacaagaaatatgtcgcctcaaaaacttgacatttttatcttttggcgagaacaatttgtct 10764918  T
Q  316 ggtaagattccatcttgtctttataatatctcatcacttattgtcttttcagtaacaaacaataactttccttgatcttaaaatattaaattttggagga 415  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10764917 ggtaagattccatcttgtctttataatatctcatcacttattgtcttttcagtaacaaacaataactttccttgatcttaaaatattaaattttggagga 10764818  T
Q  416 aatcaattctcaggtacaatccctgtttcgattgcaaatgcgtctgtcatacaattactagacataggaacaaacaaattggttggacaagttccaagtc 515  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10764817 aatcaattctcaggtacaatccctgtttcgattgcaaatgcttctgtcatacaattactagacataggaacaaacaaattggttggacaagttccaagtc 10764718  T
Q  516 tagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaaaatatttgacaaattg 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10764717 tagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaaaatatttgacaaattg 10764618  T
Q  616 cagcaaacaacatgcgctttccatagctgttaataattttggaggtcatttgccaaattccataggaaatttctccactaaact 699  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10764617 cagcaaacaacatgcgctttccatagctgttaataattttggaggtcatttgccaaattccataggaaatttctccactaaact 10764534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 2e-82
Query Start/End: Original strand, 16 - 358
Target Start/End: Original strand, 10563134 - 10563458
Alignment:
Q  16 attcctataaacttgacgtattgctccaatctcatagacttgattttgggagggaacaaattgacagggaaaatactaattgaaattggctctttgaaaa 115  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  |||||||||| |||||||||||||||||||||||    
T  10563134 attcctacaaacttgacatattgctccaatctcatagacttgattttgggagggaacaaattgattgggaaaataccaattgaaattggctctttgaaaa 10563233  T
Q  116 accttcattcattcgcccttttcggtaacaatttaaatggagggatcccttcatccttcgggaatctttcatccttcaggaatttttcatccttaatgcg 215  Q
    | ||||||||||||  |||||| ||||||||||||| ||||||||||||||||||| | ||||| ||                  |||||||||| ||||    
T  10563234 agcttcattcattccacctttttggtaacaatttaactggagggatcccttcatccatagggaacct------------------ttcatccttagtgcg 10563315  T
Q  216 ttttacgtgtgcttctaacaaattaggaggagatattccacaagaaatatgtcgcctcaaaatcttgacatttttatcttttggcgagaacaatttgtct 315  Q
    |||||||||||||||||||||||||||||||||||||||||  ||| |||| |||||||||| ||||||| ||||||  || || |||||||| ||||||    
T  10563316 ttttacgtgtgcttctaacaaattaggaggagatattccacgtgaagtatgccgcctcaaaaacttgacacttttattgttgggtgagaacaaattgtct 10563415  T
Q  316 ggtaagattccatcttgtctttataatatctcatcacttattg 358  Q
    |||| ||||||  ||||| |||| ||||| |||||||| ||||    
T  10563416 ggtatgattcctccttgtatttacaatatgtcatcactaattg 10563458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 408 - 687
Target Start/End: Original strand, 10563543 - 10563822
Alignment:
Q  408 ttggaggaaatcaattctcaggtacaatccctgtttcgattgcaaatgcgtctgtcatacaattactagacataggaacaaacaaattggttggacaagt 507  Q
    |||||| |||||||||||||||| |||||||| |||| |||| |||||| |||  | ||||| |||| ||| |||    |||| | ||||| ||||||||    
T  10563543 ttggagcaaatcaattctcaggtccaatccctatttccattgtaaatgcttcttccctacaagtactcgacttagctcaaaactatttggtgggacaagt 10563642  T
Q  508 tccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaaaatatttg 607  Q
    ||||||||||| ||| |||||| |||||  || ||||| ||| | | | |||||||||||| ||||||| |  || ||||||||||||||||| ||||||    
T  10563643 tccaagtctagagaagttacaagatctttactggctaagttttggatacaacaatttaggtaacaattcaattatagatttagagtttttaaactatttg 10563742  T
Q  608 acaaattgcagcaaacaacatgcgctttccatagctgttaataattttggaggtcatttgccaaattccataggaaattt 687  Q
    |||||||| || |||| | |   |||||| ||||||  ||||||||||||||||||||||||||||| ||| || |||||    
T  10563743 acaaattgtagtaaactagaaatgctttcgatagcttctaataattttggaggtcatttgccaaatttcattggcaattt 10563822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 409 - 693
Target Start/End: Original strand, 10610227 - 10610511
Alignment:
Q  409 tggaggaaatcaattctcaggtacaatccctgtttcgattgcaaatgcgtctgtcatacaattactagacataggaacaaacaaattggttggacaagtt 508  Q
    |||||||||||||||||||||| ||||||||||||| ||||||||||| |||  | ||||| || | ||  ||||   |||||| |||||||||||||||    
T  10610227 tggaggaaatcaattctcaggtccaatccctgtttccattgcaaatgcttcttccctacaaataattgatttaggtcaaaacaatttggttggacaagtt 10610326  T
Q  509 ccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaaaatatttga 608  Q
    |||||||||| ||| |||| | |||||  || ||| | ||||||| | ||| |||| ||| ||||||| || || |||||||||||||||||||||||||    
T  10610327 ccaagtctagagaagttaccagatctttactggctgagtttggaatacaactatttcggtaacaattcaactatagatttagagtttttaaaatatttga 10610426  T
Q  609 caaattgcagcaaacaacatgcgctttccatagctgttaataattttggaggtcatttgccaaattccataggaaatttctccac 693  Q
    |||| || || |||| | |   |||||| ||| ||  |||||| |||||||||  ||||||||||| ||| || ||||| |||||    
T  10610427 caaactgtagtaaactagaaaagctttctatatctaataataagtttggaggtagtttgccaaatttcattggcaatttatccac 10610511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 410 - 699
Target Start/End: Original strand, 7191523 - 7191812
Alignment:
Q  410 ggaggaaatcaattctcaggtacaatccctgtttcgattgcaaatgcgtctgtcatacaattactagacataggaacaaacaaattggttggacaagttc 509  Q
    |||||||||||||||||||||||||||||| |||| ||| ||||||| |||  | ||      || ||| |||    |||||| ||||| ||||||||||    
T  7191523 ggaggaaatcaattctcaggtacaatccctatttccatttcaaatgcttcttccctatttaatcttgacttagatcaaaacaatttggtcggacaagttc 7191622  T
Q  510 caagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaaaatatttgac 609  Q
    ||||||||||||| |||||  ||||| |   | ||||| | ||   ||||| ||||||| |||||||||| | ||||||||||||||||||||  |||||    
T  7191623 caagtctagggaagttacatgatcttcgacggttaaatctagagctaaacagtttaggtaacaattccactaaggatttagagtttttaaaatccttgac 7191722  T
Q  610 aaattgcagcaaacaacatgcgctttccatagctgttaataattttggaggtcatttgccaaattccataggaaatttctccactaaact 699  Q
    ||| || || |||| ||  | | |||| ||| |  ||||||||||||||||| |||||||||||||||| || ||||| |||||| ||||    
T  7191723 aaactgtagtaaactactagtgttttctatatcctttaataattttggaggtaatttgccaaattccattgggaatttatccactcaact 7191812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 494 - 678
Target Start/End: Complemental strand, 10748622 - 10748438
Alignment:
Q  494 ttggttggacaagttccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagt 593  Q
    ||||| || |||||||||||||||| ||| |||||| |||||  || ||||||||||||||| ||| |||| ||| ||||||| || || ||||||||||    
T  10748622 ttggtggggcaagttccaagtctagagaagttacaagatctttactggctaaatttggaagacaactatttcggtaacaattcaactatcgatttagagt 10748523  T
Q  594 ttttaaaatatttgacaaattgcagcaaacaacatgcgctttccatagctgttaataattttggaggtcatttgccaaattccat 678  Q
    ||||||| |||||||||||||| || |||| | | | | |||| |||  |  |||||| |||||||||  |||||||||||||||    
T  10748522 ttttaaagtatttgacaaattgtagtaaactagaagtggtttctatatgtaataataagtttggaggtagtttgccaaattccat 10748438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 497 - 612
Target Start/End: Original strand, 10603358 - 10603473
Alignment:
Q  497 gttggacaagttccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttt 596  Q
    ||||||||||||||||||||||||||  || || |||||   |||||||||||||||   |||| |||||||||||| || ||||| ||||| |||||||    
T  10603358 gttggacaagttccaagtctagggaagctaaaagatctttatttgctaaatttggaaatgaacattttaggtgacaactcaacaattgatttggagtttt 10603457  T
Q  597 taaaatatttgacaaa 612  Q
    ||||||  ||||||||    
T  10603458 taaaatcattgacaaa 10603473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 24 - 122
Target Start/End: Complemental strand, 10749109 - 10749011
Alignment:
Q  24 aaacttgacgtattgctccaatctcatagacttgattttgggagggaacaaattgacagggaaaatactaattgaaattggctctttgaaaaaccttca 122  Q
    ||||||||| |||||||||||||||| || ||| | | |||||||||||||  |||  || ||||||| |||||||||||||||||||||||| |||||    
T  10749109 aaacttgacatattgctccaatctcaaaggcttaaatgtgggagggaacaatgtgattggcaaaataccaattgaaattggctctttgaaaaagcttca 10749011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 539 - 615
Target Start/End: Complemental strand, 10218308 - 10218232
Alignment:
Q  539 ttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaaaatatttgacaaattg 615  Q
    ||||||| ||||||| | ||| |||||||||||||||| |||| |||||| ||||||||||||| ||||||||||||    
T  10218308 ttgctaagtttggaatacaactatttaggtgacaattcaacaaaggatttggagtttttaaaatctttgacaaattg 10218232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 407 - 687
Target Start/End: Complemental strand, 10742396 - 10742113
Alignment:
Q  407 tttggaggaaatcaattctcaggtacaatccctgtttcgattgcaaatgcgtctgtcatacaattactagacatag--gaac-aaacaaattggttggac 503  Q
    ||||||| |||||||||| ||||| |||||||| |||| ||||||||||| |||| | |||||| ||| ||  |||  || | |||||| ||||||||||    
T  10742396 tttggagtaaatcaattcacaggtccaatccctatttccattgcaaatgcttctgccttacaatcacttgatttaggtgatcaaaacaatttggttggac 10742297  T
Q  504 aagttccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaaaata 603  Q
    ||||||||| ||| ||||| |||||  |||||       |||||||| |    |||||||||||| |||||||  | || ||||||  |||||||| |||    
T  10742296 aagttccaaatcttgggaagttacaggatcttcaaagattaaatttgcagtctaacaatttaggtaacaattcagccatagatttaatgtttttaagata 10742197  T
Q  604 tttgacaaattgcagcaaacaacatgcgctttccatagctgttaataattttggaggtcatttgccaaattccataggaaattt 687  Q
    |||||||||||| |  |||  | |   | |||| ||||||| ||||||||| |||||| |||| |||||||||||||| |||||    
T  10742196 tttgacaaattgtactaaattaaaattgttttcgatagctggtaataatttcggaggtaattttccaaattccataggcaattt 10742113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 16 - 186
Target Start/End: Complemental strand, 10742804 - 10742634
Alignment:
Q  16 attcctataaacttgacgtattgctccaatctcatagacttgattttgggagggaacaaattgacagggaaaatactaattgaaattggctctttgaaaa 115  Q
    ||||||| ||||||||| |||||||| ||||| | || | | | ||||| ||||||||| ||||  || ||||||| |||||||||||||| ||||||||    
T  10742804 attcctacaaacttgacatattgctcaaatctgaaagtcataactttggcagggaacaagttgattggcaaaataccaattgaaattggctatttgaaaa 10742705  T
Q  116 accttcattcattcgcccttttcggtaacaatttaaatggagggatcccttcatccttcgggaatctttca 186  Q
    | ||||| |||||     |||    ||||||||||| |||||| ||| |||||||| | ||||||||||||    
T  10742704 aacttcaatcattgagtgtttggaataacaatttaactggaggaatctcttcatccatagggaatctttca 10742634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 194 - 355
Target Start/End: Original strand, 10609977 - 10610138
Alignment:
Q  194 ggaatttttcatccttaatgcgttttacgtgtgcttctaacaaattaggaggagatattccacaagaaatatgtcgcctcaaaatcttgacatttttatc 293  Q
    ||||| |||||| ||||| ||||||| |   | |||| ||||| |||| ||| |||||||||||||||| |||||| |||||||  |||| |  |||||     
T  10609977 ggaatctttcatgcttaacgcgtttttcagttacttcaaacaacttagaaggggatattccacaagaaacatgtcgtctcaaaaatttgagaggtttatt 10610076  T
Q  294 ttttggcgagaacaatttgtctggtaagattccatcttgtctttataatatctcatcactta 355  Q
    | | || |  ||| |||||||||||| |||||| ||||||||||| ||||||||| ||||||    
T  10610077 tatgggtgtaaactatttgtctggtatgattccttcttgtctttacaatatctcagcactta 10610138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 485 - 570
Target Start/End: Complemental strand, 10718514 - 10718429
Alignment:
Q  485 acaaacaaattggttggacaagttccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtga 570  Q
    |||||||| ||||||||||||||||||||| ||||| | |||||| ||||| | || ||||||||| ||  |||||||||||||||    
T  10718514 acaaacaatttggttggacaagttccaagtataggggagttacaaaatcttcgatttctaaatttgcaatcaaacaatttaggtga 10718429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 301 - 353
Target Start/End: Complemental strand, 10748850 - 10748798
Alignment:
Q  301 gagaacaatttgtctggtaagattccatcttgtctttataatatctcatcact 353  Q
    ||||||||||||||||||| | |||| ||||||||||||||||||||||||||    
T  10748850 gagaacaatttgtctggtatgtttccttcttgtctttataatatctcatcact 10748798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 186
Target Start/End: Complemental strand, 11049955 - 11049804
Alignment:
Q  35 attgctccaatctcatagacttgattttgggagggaacaaattgacagggaaaatactaattgaaattggctctttgaaaaaccttcattcattcgccct 134  Q
    ||||||||||||| | |||||||  ||||||||||||||| || |  || || |||| || ||||||||||||||||||||| ||||| ||||| ||| |    
T  11049955 attgctccaatcttaaagacttgtatttgggagggaacaatttaattggcaagataccaaatgaaattggctctttgaaaaaacttcaatcattggccat 11049856  T
Q  135 tttcggtaacaatttaaatggagggatcccttcatccttcgggaatctttca 186  Q
    ||     || || |||| |||||| |||||||||| | | ||||||||||||    
T  11049855 ttggaaaaataaattaactggaggaatcccttcattcatagggaatctttca 11049804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 602
Target Start/End: Original strand, 10579615 - 10579717
Alignment:
Q  500 ggacaagttccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaa 599  Q
    |||||||||||| ||||||||||  ||||  | ||| | | ||||| |||| |||| ||||| ||||||||||||||||  | |||||||||||||||||    
T  10579615 ggacaagttccatgtctagggaagctacagaaactttggtcgctaagtttgcaagataacaaattaggtgacaattccagtaaggatttagagtttttaa 10579714  T
Q  600 aat 602  Q
    |||    
T  10579715 aat 10579717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 500 - 602
Target Start/End: Complemental strand, 10590028 - 10589926
Alignment:
Q  500 ggacaagttccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaa 599  Q
    |||||||||||| ||||||||||  ||||  | ||| | | ||||| |||| |||| ||||| ||||||||||||||||  | |||||||||||||||||    
T  10590028 ggacaagttccatgtctagggaagctacagaaactttggtcgctaagtttgcaagataacaaattaggtgacaattccagtaaggatttagagtttttaa 10589929  T
Q  600 aat 602  Q
    |||    
T  10589928 aat 10589926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 122
Target Start/End: Original strand, 10609817 - 10609923
Alignment:
Q  16 attcctataaacttgacgtattgctccaatctcatagacttgattttgggagggaacaaattgacagggaaaatactaattgaaattggctctttgaaaa 115  Q
    ||||||| |||| ||||  ||||||||||||||| ||| ||   ||||||||| ||||| ||||  || |||||||  ||||||||||||||||||||||    
T  10609817 attcctacaaacctgacacattgctccaatctcaaagagttacgtttgggaggaaacaatttgattggcaaaataccgattgaaattggctctttgaaaa 10609916  T
Q  116 accttca 122  Q
    | |||||    
T  10609917 agcttca 10609923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 497 - 597
Target Start/End: Original strand, 10599693 - 10599793
Alignment:
Q  497 gttggacaagttccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttt 596  Q
    ||||||||||||||||||||||||||  || || |||||   |||||||||||||||   |||| |||||||||||  || |||||||||||  ||||||    
T  10599693 gttggacaagttccaagtctagggaagctaaaagatctttatttgctaaatttggaaatgaacattttaggtgacagctcaacaatggatttgcagtttt 10599792  T
Q  597 t 597  Q
    |    
T  10599793 t 10599793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 497 - 615
Target Start/End: Complemental strand, 9837932 - 9837814
Alignment:
Q  497 gttggacaagttccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttt 596  Q
    ||||||||||||||||||||||||||  ||||| |||||   ||||||||| | |||   |||| | ||||||||||||| || | |||||||| |||||    
T  9837932 gttggacaagttccaagtctagggaagctacaagatcttaatttgctaaatcttgaaatgaacattctaggtgacaattcaactaaggatttagggtttt 9837833  T
Q  597 taaaatatttgacaaattg 615  Q
    | |||  | ||||||||||    
T  9837832 tgaaaactatgacaaattg 9837814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 231 - 353
Target Start/End: Complemental strand, 10718803 - 10718681
Alignment:
Q  231 taacaaattaggaggagatattccacaagaaatatgtcgcctcaaaatcttgacatttttatcttttggcgagaacaatttgtctggtaagattccatct 330  Q
    |||||| ||||  |||| |||||||| |||||||||||| ||||||| ||||||| |||||| |   |     ||||||||||||||||  ||||| |||    
T  10718803 taacaacttagacggagttattccaccagaaatatgtcgtctcaaaaacttgacaattttatatgcagatcctaacaatttgtctggtataattccttct 10718704  T
Q  331 tgtctttataatatctcatcact 353  Q
    ||| |||| ||||||||||||||    
T  10718703 tgtttttacaatatctcatcact 10718681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 416 - 456
Target Start/End: Complemental strand, 10653887 - 10653847
Alignment:
Q  416 aatcaattctcaggtacaatccctgtttcgattgcaaatgc 456  Q
    |||||||||||||||||||||||| |||| |||||||||||    
T  10653887 aatcaattctcaggtacaatccctatttccattgcaaatgc 10653847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 238 - 282
Target Start/End: Complemental strand, 11049763 - 11049719
Alignment:
Q  238 ttaggaggagatattccacaagaaatatgtcgcctcaaaatcttg 282  Q
    |||| |||||||||||||||||||||||||| |||||||| ||||    
T  11049763 ttagaaggagatattccacaagaaatatgtcacctcaaaagcttg 11049719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 244 - 282
Target Start/End: Original strand, 10549110 - 10549148
Alignment:
Q  244 ggagatattccacaagaaatatgtcgcctcaaaatcttg 282  Q
    |||||||||||||||||||||||||| ||||||| ||||    
T  10549110 ggagatattccacaagaaatatgtcgtctcaaaaacttg 10549148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 143; Significance: 1e-74; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 143; E-Value: 1e-74
Query Start/End: Original strand, 390 - 699
Target Start/End: Complemental strand, 17925117 - 17924805
Alignment:
Q  390 atcttaaaatattaaattttggaggaaatcaattctcaggtacaatccctgtttcgattgcaaatgcgtctgtcatacaattactagacataggaacaaa 489  Q
    |||||||||||||  |||||| ||||||||||||||||||| |||||||| ||||||||||||| || |||| | ||||| || ||||| ||  |  |||    
T  17925117 atcttaaaatatttgattttgcaggaaatcaattctcaggtccaatccctttttcgattgcaaacgcttctgccctacaaatattagacttatcagaaaa 17925018  T
Q  490 ca---aattggttggacaagttccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggat 586  Q
    ||   | |||||||||||||||||||||||||||||||||||| | |||  | | ||||||||||||||||||||||||||||| ||||| || ||||||    
T  17925017 catgaatttggttggacaagttccaagtctagggaatttacaagacctttccattctaaatttggaagaaaacaatttaggtgataattcaactatggat 17924918  T
Q  587 ttagagtttttaaaatatttgacaaattgcagcaaacaacatgcgctttccatagctgttaataattttggaggtcatttgccaaattccataggaaatt 686  Q
    |||||||||||||||||||||||||||||||| |||| |||   | |||| ||| ||  |||||||||||||||||||||||||||||||||||| ||||    
T  17924917 ttagagtttttaaaatatttgacaaattgcagtaaactacacaagttttcgatatcttataataattttggaggtcatttgccaaattccatagggaatt 17924818  T
Q  687 tctccactaaact 699  Q
    | |||||| ||||    
T  17924817 tatccactgaact 17924805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 244 - 357
Target Start/End: Complemental strand, 17925298 - 17925185
Alignment:
Q  244 ggagatattccacaagaaatatgtcgcctcaaaatcttgacatttttatcttttggcgagaacaatttgtctggtaagattccatcttgtctttataata 343  Q
    |||||||||||||||||||||||| ||| ||||  ||||||||||||| |||| || ||||||||||| || |||||||||||||||||||||||||| |    
T  17925298 ggagatattccacaagaaatatgttgccgcaaacacttgacatttttagctttgggtgagaacaatttttccggtaagattccatcttgtctttataaca 17925199  T
Q  344 tctcatcacttatt 357  Q
    ||||||||||||||    
T  17925198 tctcatcacttatt 17925185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 127; Significance: 3e-65; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 406 - 687
Target Start/End: Original strand, 12930790 - 12931074
Alignment:
Q  406 ttttggaggaaatcaattctcaggtacaatccctgtttcgattgcaaatgcgtctgtcatacaattactagacataggaacaaaca---aattggttgga 502  Q
    ||||| || |||||||||||||||| ||||||||  ||||||||||||||| |||| | ||||| || ||||| ||||||  ||||   | |||||||||    
T  12930790 ttttgcagcaaatcaattctcaggtccaatccctacttcgattgcaaatgcttctgccctacaaatattagacttaggaaacaacatgaatttggttgga 12930889  T
Q  503 caagttccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaaaat 602  Q
    ||||||||||||||  ||||||||||| |||||  ||| |||| ||||||||  |||||||||||| ||||||| || ||||||||||||||||||||||    
T  12930890 caagttccaagtcttaggaatttacaagatctttccttcctaagtttggaagttaacaatttaggtaacaattcaactatggatttagagtttttaaaat 12930989  T
Q  603 atttgacaaattgcagcaaacaacatgcgctttccatagctgttaataattttggaggtcatttgccaaattccataggaaattt 687  Q
    |||||||||||||||| |||| | | | |||||| ||| ||  |||||||||||||||||||||||||||||||||||| |||||    
T  12930990 atttgacaaattgcagtaaactatacgtgctttcgatatcttataataattttggaggtcatttgccaaattccataggcaattt 12931074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 390 - 699
Target Start/End: Original strand, 12956576 - 12956888
Alignment:
Q  390 atcttaaaatattaaattttggaggaaatcaattctcaggtacaatccctgtttcgattgcaaatgcgtctgtcatacaattactagacataggaacaaa 489  Q
    ||||| |||||||  |||||| || |||||||||||||||| |||||||| |||||||||||||||| |||| | ||||| || ||||| |||||   ||    
T  12956576 atcttcaaatattcgattttgcagcaaatcaattctcaggtccaatccctatttcgattgcaaatgcttctgccctacaaatattagacttaggagacaa 12956675  T
Q  490 ca---aattggttggacaagttccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggat 586  Q
    ||   | |||||||||||||||||||||||||||||||||||| | |||  |   ||||||||| ||  ||||||||||||| ||| ||| || ||||||    
T  12956676 catgaatttggttggacaagttccaagtctagggaatttacaagacctttccaatctaaatttgcaatcaaacaatttaggtaacatttcaactatggat 12956775  T
Q  587 ttagagtttttaaaatatttgacaaattgcagcaaacaacatgcgctttccatagctgttaataattttggaggtcatttgccaaattccataggaaatt 686  Q
    ||||| ||| ||||||||||||| |||||||| |||| |||   |||||| ||| ||  ||||||||||||||| |||||||||||||||||||| ||||    
T  12956776 ttagaatttctaaaatatttgactaattgcagtaaactacacaagctttcgatatcttataataattttggaggccatttgccaaattccatagggaatt 12956875  T
Q  687 tctccactaaact 699  Q
    | |||||| ||||    
T  12956876 tatccactgaact 12956888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 7e-51
Query Start/End: Original strand, 390 - 699
Target Start/End: Original strand, 12905685 - 12905997
Alignment:
Q  390 atcttaaaatattaaattttggaggaaatcaattctcaggtacaatccctgtttcgattgcaaatgcgtctgtcatacaattactagacataggaacaaa 489  Q
    |||||||| ||||| |||||| |  |||||||||||| ||| |||||||| |||||||||  ||||| |||| | ||||| || ||||| ||  || |||    
T  12905685 atcttaaattattacattttgcatcaaatcaattctctggtccaatccctatttcgattgataatgcttctgccctacaaatattagacttatcaaaaaa 12905784  T
Q  490 c---aaattggttggacaagttccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggat 586  Q
    |   || |||||||||||||||||||||||||||||||||||| |||||  | | |||| ||||| |   |||||||||||| ||| ||| || | ||||    
T  12905785 catgaatttggttggacaagttccaagtctagggaatttacaaaatctttccattctaagtttgggattcaacaatttaggtaacatttcaactaaggat 12905884  T
Q  587 ttagagtttttaaaatatttgacaaattgcagcaaacaacatgcgctttccatagctgttaataattttggaggtcatttgccaaattccataggaaatt 686  Q
    |||||||||||||||||||||||||||||||| |||| | | | |||||| |||| |  ||||||||||||||| |||||||||||||||||||| || |    
T  12905885 ttagagtttttaaaatatttgacaaattgcagtaaactatacgtgctttcaatagattctaataattttggaggacatttgccaaattccataggcaact 12905984  T
Q  687 tctccactaaact 699  Q
    | |||||| ||||    
T  12905985 tttccactgaact 12905997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 405 - 699
Target Start/End: Original strand, 12947154 - 12947451
Alignment:
Q  405 attttggaggaaatcaattctcaggtacaatccctgtttcgattgcaaatgcgtctgtcatacaattactagacataggaacaaaca---aattggttgg 501  Q
    ||||||||| |||||||||||||||| |||| ||| |||| ||||||||||| |||| | |||||  | ||||| |||||   ||||   | ||||||||    
T  12947154 attttggagcaaatcaattctcaggtccaattcctatttcaattgcaaatgcttctgccctacaaagattagacttaggacacaacatgaatttggttgg 12947253  T
Q  502 acaagttccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatggatttagagtttttaaaa 601  Q
    |||||||||||||||  ||||||||||| |||||  ||| |||| |||||||   |||||||||||| ||| ||| || ||||| |||||||||||||||    
T  12947254 acaagttccaagtcttaggaatttacaagatctttccttcctaagtttggaatttaacaatttaggtaacatttcaactatggacttagagtttttaaaa 12947353  T
Q  602 tatttgacaaattgcagcaaacaacatgcgctttccatagctgttaataattttggaggtcatttgccaaattccataggaaatttctccactaaact 699  Q
    ||||||||||||||||| |||| | |   |||||| ||| ||   ||||||||| |||||| |||||||||||||||||| ||||| |||||| ||||    
T  12947354 tatttgacaaattgcagtaaactaaacatgctttcgatatcttaaaataattttcgaggtcgtttgccaaattccataggcaatttatccactgaact 12947451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 93; E-Value: 7e-45
Query Start/End: Original strand, 390 - 699
Target Start/End: Original strand, 12898063 - 12898377
Alignment:
Q  390 atcttaaaatattaaattttggaggaaatcaattctcaggtacaatccctgtttcgattgcaaatgcgtctgtcatacaattactagacataggaacaaa 489  Q
    |||||||| | ||| |||||||||||||||||||||| ||| |||| ||| |||||||||| ||||| |||  | ||||| || ||||| ||  |  |||    
T  12898063 atcttaaatttttacattttggaggaaatcaattctctggtccaattcctatttcgattgctaatgcttctaccctacaaatattagacttatcagaaaa 12898162  T
Q  490 ca---aattggttggacaagttccaagtctagggaatttacaacatcttggcttgctaaatttggaagaaaacaatttaggtgacaattccacaatgga- 585  Q
    ||   | |||||||||||||||||||||||||||||||||||| |||||  | | |||| ||||| |   |||||||||||| ||| ||| || |||||     
T  12898163 catgaatttggttggacaagttccaagtctagggaatttacaaaatctttccattctaagtttgggattcaacaatttaggtaacatttcaactatggat 12898262  T
Q  586 tttagagtttttaaaatatttgacaaattgcagcaaacaacatgcgctttccatagctgttaataa-ttttggaggtcatttgccaaattccataggaaa 684  Q
    |||||| |||||||||||||||||||||||||| |||| | ||| |||||| |||||||  ||||| |||||| |||||  |||||||||||||||| ||    
T  12898263 tttagattttttaaaatatttgacaaattgcagtaaactaaatgtgctttcgatagctggaaataatttttggtggtcaactgccaaattccataggcaa 12898362  T
Q  685 tttctccactaaact 699  Q
    ||| |||||| ||||    
T  12898363 tttttccactgaact 12898377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 244 - 358
Target Start/End: Original strand, 12956395 - 12956509
Alignment:
Q  244 ggagatattccacaagaaatatgtcgcctcaaaatcttgacatttttatcttttggcgagaacaatttgtctggtaagattccatcttgtctttataata 343  Q
    |||||||||||||||||||||||| ||  ||||  ||||||||||||| |||| || |||||||||||||| ||||||||||| ||||||||||||||||    
T  12956395 ggagatattccacaagaaatatgttgctgcaaacacttgacatttttagctttgggtgagaacaatttgtccggtaagattccttcttgtctttataata 12956494  T
Q  344 tctcatcacttattg 358  Q
    |||||||||||||||    
T  12956495 tctcatcacttattg 12956509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 244 - 372
Target Start/End: Original strand, 12946958 - 12947086
Alignment:
Q  244 ggagatattccacaagaaatatgtcgcctcaaaatcttgacatttttatcttttggcgagaacaatttgtctggtaagattccatcttgtctttataata 343  Q
    ||||| ||||||||||||||||||   ||||||  ||||||||||||| ||||    |||||||||||||| ||||||||||| ||||||||||||||||    
T  12946958 ggagacattccacaagaaatatgttttctcaaacacttgacatttttagctttgaatgagaacaatttgtccggtaagattccttcttgtctttataata 12947057  T
Q  344 tctcatcacttattgtcttttcagtaaca 372  Q
    ||||||||||||||||| |||| ||||||    
T  12947058 tctcatcacttattgtcctttcggtaaca 12947086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 244 - 357
Target Start/End: Original strand, 12905503 - 12905617
Alignment:
Q  244 ggagatattccacaagaaatatgtcgcctcaaaatcttgacatttttatcttttggcgagaa-caatttgtctggtaagattccatcttgtctttataat 342  Q
    ||||||||||||||||||||||||  |||||||  ||||||||||||| |||| || ||||| ||||||||| |||||||| || |||||||||||||||    
T  12905503 ggagatattccacaagaaatatgtttcctcaaacacttgacatttttagctttgggtgagaaacaatttgtccggtaagataccttcttgtctttataat 12905602  T
Q  343 atctcatcacttatt 357  Q
    |||||||||||||||    
T  12905603 atctcatcacttatt 12905617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 244 - 357
Target Start/End: Original strand, 12897882 - 12897995
Alignment:
Q  244 ggagatattccacaagaaatatgtcgcctcaaaatcttgacatttttatcttttggcgagaacaatttgtctggtaagattccatcttgtctttataata 343  Q
    ||||||||||||||||||||||||  |||||||  |||||||| ||||  |||  | |  ||||||||||| ||||||||||| ||||||||||||||||    
T  12897882 ggagatattccacaagaaatatgtttcctcaaacacttgacatatttaggtttgagtgtcaacaatttgtccggtaagattccttcttgtctttataata 12897981  T
Q  344 tctcatcacttatt 357  Q
    ||||||||||||||    
T  12897982 tctcatcacttatt 12897995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 250 - 357
Target Start/End: Original strand, 12930599 - 12930706
Alignment:
Q  250 attccacaagaaatatgtcgcctcaaaatcttgacatttttatcttttggcgagaacaatttgtctggtaagattccatcttgtctttataatatctcat 349  Q
    ||||||||||||||||||  |||||||  ||||||| |||||  | |  | |||||||||||||| ||||||||||| ||||||||||||||||||||||    
T  12930599 attccacaagaaatatgtttcctcaaacacttgacaattttaggtgtgagtgagaacaatttgtccggtaagattccttcttgtctttataatatctcat 12930698  T
Q  350 cacttatt 357  Q
    ||||||||    
T  12930699 cacttatt 12930706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 85 - 122
Target Start/End: Original strand, 12930452 - 12930489
Alignment:
Q  85 aaaatactaattgaaattggctctttgaaaaaccttca 122  Q
    ||||||| |||||||||||||||||||||||| |||||    
T  12930452 aaaataccaattgaaattggctctttgaaaaagcttca 12930489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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