View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_80 (Length: 332)
Name: NF0836_low_80
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_80 |
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Alignment Details
Target: chr6 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 7320285 - 7320476
Alignment:
| Q |
1 |
gacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaactaca |
100 |
Q |
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| T |
7320285 |
gacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaactaca |
7320384 |
T |
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| Q |
101 |
ttagtggtgttctactttacttcatttctggtttcttatggtccttctacatttactattggaaacaaaatgtttatgtccctaaaggtgtc |
192 |
Q |
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| T |
7320385 |
ttagtggtgttctactttacttcatttcttgtttcttatggtccttctacatttactattggaaacaaaatgtttatgtccctaaaggtgtc |
7320476 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 7304283 - 7304471
Alignment:
| Q |
1 |
gacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaactaca |
100 |
Q |
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| T |
7304283 |
gacacaaacatgtacaaccacattgtattaggaaccttgttaccacactacttgtgggttccacttccaagattcttccaaagatggcttcgaaactacg |
7304382 |
T |
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| Q |
101 |
ttagtggtgttctactttacttcatttctggtttcttatggtccttctacatttactattggaaacaaaatgtttatgtccctaaaggt |
189 |
Q |
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| T |
7304383 |
ttggtgctgtcctactttacttcatttctggtttcttatggtccttctacatttactattggaaacgcaatgtttatcttcctaaaggt |
7304471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 7302270 - 7302458
Alignment:
| Q |
1 |
gacacagacatgtacaaccacattgtattaggaaccttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaactaca |
100 |
Q |
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| T |
7302270 |
gacacaaacatgtacaaccacgttgtattaggaaccttgttaccacaatacttgtgggtgctactcccacggttcttccaaacatggcttcgaaactacg |
7302369 |
T |
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| Q |
101 |
ttagtggtgttctactttacttcatttctggtttcttatggtccttctacatttactattggaaacaaaatgtttatgtccctaaaggt |
189 |
Q |
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| T |
7302370 |
ttggtgctgtccttctttacttcatttctggttttttatggtccttctacatttaccattggaaacagaatgtttatgtccctaaaggt |
7302458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 34 - 190
Target Start/End: Original strand, 7281860 - 7282016
Alignment:
| Q |
34 |
accttgttgccacagttcttgtgggttccacttccaagattcttccaaacatggcttcgaaactacattagtggtgttctactttacttcatttctggtt |
133 |
Q |
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| T |
7281860 |
accttgttacctcagtttttgtgggtcccacttccaaggttcttccaaacatggcttcgtaactacattggtggtcttctactttacttcatttctggtt |
7281959 |
T |
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| Q |
134 |
tcttatggtccttctacatttactattggaaacaaaatgtttatgtccctaaaggtg |
190 |
Q |
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| T |
7281960 |
tcttttggtccttttacatttactgttggaaacgcaatgtttatcttcctaaaggtg |
7282016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 7304896 - 7305005
Alignment:
| Q |
74 |
tcttccaaacatggcttcgaaactacattagtggtgttctactttacttcatttctggtttcttatggtccttctacatttactattggaaacaaaatgt |
173 |
Q |
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|||| ||||||||||||| ||||| |||| ||||||| | |||||||| |||| |||||||||||||||||| | ||||||||||||| | || ||||| |
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| T |
7304896 |
tcttacaaacatggcttccaaacttcattggtggtgtctttctttactttatttatggtttcttatggtccttgttcatttactattgggagcacaatgt |
7304995 |
T |
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| Q |
174 |
ttatgtccct |
183 |
Q |
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|||||||||| |
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| T |
7304996 |
ttatgtccct |
7305005 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 278
Target Start/End: Original strand, 7320525 - 7320563
Alignment:
| Q |
240 |
aatatgtttgtcttattatttcatataaatgtgttttgc |
278 |
Q |
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| T |
7320525 |
aatatgtttatcttatgatttcatataaatgtgttttgc |
7320563 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 293 - 322
Target Start/End: Original strand, 7320582 - 7320611
Alignment:
| Q |
293 |
taataaatttgtgtttatttcgtattcatc |
322 |
Q |
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| T |
7320582 |
taataaatttgtgtttatttcgtattcatc |
7320611 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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