View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_9 (Length: 722)
Name: NF0836_low_9
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 631; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 8 - 694
Target Start/End: Original strand, 43051221 - 43051916
Alignment:
| Q |
8 |
tatcatagggtaagttactaggtgcacaccctccatgtccacaatttcttcactactatagattttccacattttatctcctattgagcacattctttgc |
107 |
Q |
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| T |
43051221 |
tatcatagggtaagttactaggtgcacaccctccatgtccacaatttcttcactactatagattttccacattttatctcctattgagcacattctttgc |
43051320 |
T |
|
| Q |
108 |
acacattctaaactttctggctctaaaaacaacttctcagcactaccagtgtgttcataccacattgacattctgtattcatgaatgtcacctttgctta |
207 |
Q |
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| T |
43051321 |
acacattttaaactttctggctctaaaaacaacttctcagcactaccagtgtgttcataccacatcgacattctgtattcatgaatgtcacctttgctta |
43051420 |
T |
|
| Q |
208 |
tgggatgatcaactccgtcttgatgagactggtagcctccgatcgcaatttctgtgtccctttgcccgtccatcgatctttggtttacatttgctgatcc |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43051421 |
tgggatgatcaactccgtcttgatgagactggtagcctccgatcgcaatttctgtgtccctttgcccgtccatcgatctttggtttacatttgctgatcc |
43051520 |
T |
|
| Q |
308 |
tattagtatatataggtcatccactggtgcaaggaacaaaaacaaaacacattttagttaaaccaagataatgaatggtgttttctcttctttctaaaat |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
43051521 |
tattagtatatataggtcatccactggtgcaaggaacaaaaacaaaacacattttagttaaaccaagataatgaatggtgttttctcttctttctgaaat |
43051620 |
T |
|
| Q |
408 |
gagttattgcaataaatttattgtaaaaaatcactcctattaagtttttgtattggaaaggttgaatagctaaaaataacatgcaggatgacaatagtta |
507 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
43051621 |
gagttattgcaataaatttattgtaaaaaatcactcctattaagtttttgtattggaaaggttgaatagccaaaaataacatgcaggatgacaatagtta |
43051720 |
T |
|
| Q |
508 |
gttgttgaacatatatggcttgatcaccgttttcgtcttcttattttccatcgctcacgaaattgatcccttctttt--------attatttggtccttt |
599 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43051721 |
gttgttgaacatatatggcttgatcaccgttttcgtcttcttattttccatcgctcacgaaattgatcccttcttttaaaatctaattatttggtccttt |
43051820 |
T |
|
| Q |
600 |
actcgtattttggatctaaagtgttgacgtgacaa-attttttattgatgtggtacagaaacctatgtattattataaattcacccggatgattct |
694 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||| |
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| T |
43051821 |
actcgtattttggatctaaagtgttgacgtgacaattttttttattgatgtggcatagaaacctatgtattattataaattcacccggatgattct |
43051916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 5402882 - 5402708
Alignment:
| Q |
18 |
taagttactaggtgcacaccctccatgtccacaatttcttcactactatagattttccacattttatctcctattgagcacattctttgcacacattcta |
117 |
Q |
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||||| || ||||||||||| |||||||| |||||||||||| | || ||||||| |||||||| |||||| ||||| |||||||||| ||||||||| | |
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| T |
5402882 |
taagtaacaaggtgcacaccttccatgtctacaatttcttcattgctgtagatttcccacatttgatctccaattgaacacattcttttcacacattcca |
5402783 |
T |
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| Q |
118 |
aactttctggctctaaaaacaacttctcagcactaccagtgtgttcataccacattgacattctgtattcatgaa |
192 |
Q |
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|||| | ||||||||| || || | ||| ||||| ||||| |||||||| | || |||||||||| |||||| |
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| T |
5402782 |
aactctgtggctctaagaataattcatcaacactatttgtgtgctcataccatagtgccattctgtatgcatgaa |
5402708 |
T |
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