View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_90 (Length: 312)
Name: NF0836_low_90
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_90 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 23 - 304
Target Start/End: Original strand, 5052787 - 5053067
Alignment:
| Q |
23 |
ccaacttcggttcgttagtttgccttgttcgagnnnnnnnnntatgttaccatctgtttcaaattgtataagtatctattttttctccctatatattaag |
122 |
Q |
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|||| |||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5052787 |
ccaatttcggttcattagtttgccttgttcgagaaaaaaaa-tatgctaccatctgtttcaaattgtataagtatctattttttctccctatatattaag |
5052885 |
T |
|
| Q |
123 |
aaaattttgtagtgaacttaatgcgtctaatttgtgtgaagacctttctaaaatactctttgtatattaatgtttttctggaacatcctttgcatagcag |
222 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5052886 |
aaaattttgtagtgaacttgatgcgtctaatttgtgtgaagacctttctaaaatactctttgtatattaatgtttttctggaacatcctttgcatagcag |
5052985 |
T |
|
| Q |
223 |
aactgtttcatttcccgccttactcaagaagtggagcatcgtgtgtgtaataatcatgcgtttaaagtaatcgatctgtgct |
304 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
5052986 |
aactgtttcatttcccaccttactcaagaagtggagcatcgtgtgtgtaataatcattcgtttaaagtaatcgatctgtgct |
5053067 |
T |
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