View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_94 (Length: 305)
Name: NF0836_low_94
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_94 |
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Alignment Details
Target: chr1 (Bit Score: 236; Significance: 1e-130; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 43209024 - 43209319
Alignment:
| Q |
1 |
tttgggtcaacactgggactaatccttaagtcggtagtgtggcatctgattattttgaatgacgttgtaccgactcgaaccaaacaactccagaaatcga |
100 |
Q |
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| T |
43209024 |
tttgggtaaacactgggactaatgcttaagtcggtagtgcggcatcttattaatttgaatgaagttgtaccgactccaaccaaacaactccaggaatcga |
43209123 |
T |
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| Q |
101 |
actcatattctttttctatggaagaaccatgtttccacttgccaaccctcccaaaaa-attggtaactgtttgcttcaaacatatatcgagatagaggtt |
199 |
Q |
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| T |
43209124 |
actcatattctttttctatagaagaaccatgtttccacttgccaaccctcccaaaaacattggtaattgtttgcttcaaacatatatcgagatagaggtt |
43209223 |
T |
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| Q |
200 |
aagaaagttgagtggaacttattttaccttatatttttgttttatgccatagcaaaaatatacacacacactcactcactcgttattttacttcat |
295 |
Q |
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| T |
43209224 |
aagaaagttgagtggagcttattttatcttatatttttgttttatgccatagcaaaaatatacacacacactcactcactctttattttacttcat |
43209319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 5 - 175
Target Start/End: Original strand, 43188669 - 43188841
Alignment:
| Q |
5 |
ggtcaacactgggactaatccttaagtcggtagtgtggcatctgattattttgaatgacgttgtaccgactcgaaccaaacaactccagaaatcgaactc |
104 |
Q |
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||||||||||||||||| ||||||||||||||||| ||||| ||||||||||| | |||| || ||||| || ||| ||||||||| |||| ||||| |
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| T |
43188669 |
ggtcaacactgggactactccttaagtcggtagtggagcatccaattattttgaacggagttggactgactccaaacaagcaactccaggaatcaaactc |
43188768 |
T |
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| Q |
105 |
atattctttttctatggaagaaccatgtttccacttgccaa-ccctcccaaaaa-attggtaactgtttgctt |
175 |
Q |
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| T |
43188769 |
atattctttttctatagaagaaccatgttgccacttgccaacccctcccaaaaactttggtaattgtttgctt |
43188841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 195 - 268
Target Start/End: Original strand, 43188947 - 43189020
Alignment:
| Q |
195 |
aggttaagaaagttgagtggaacttattttaccttatatttttgttttatgccatagcaaaaatatacacacac |
268 |
Q |
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||||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
43188947 |
aggttaagaaagttgggtggagcttattttaccttatatttttgttttatgccgtagcaaaaatatatacacac |
43189020 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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