View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0836_low_96 (Length: 301)
Name: NF0836_low_96
Description: NF0836
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0836_low_96 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 42225563 - 42225710
Alignment:
| Q |
1 |
agacgatttagttcctgctcaagatgccatttccttaatagaaagattttcatgtattttaaagactaagttgataaatttcatatacgttaaaaactac |
100 |
Q |
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| T |
42225563 |
agacgatttagttcctgctcaagatgccatttccttaatagaaagattttcatgtattttaaagactaagttgataaatttcatatacgttaaaaactac |
42225662 |
T |
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| Q |
101 |
ttattatattcatgtagtttaagaactaaatcaaaaacaaaatgatag |
148 |
Q |
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| T |
42225663 |
ttattatattcatgtagtttaagaactaaatcaaaaacaaaatgatag |
42225710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 219 - 272
Target Start/End: Original strand, 42225794 - 42225847
Alignment:
| Q |
219 |
aggaatttgttgaacaaaaacacacgtaccaatgtagtcggtgaggactcttcc |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42225794 |
aggaatttgttgaacaaaaacacacgtaccaatgtagtcggtgaggactcttcc |
42225847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 149 - 190
Target Start/End: Original strand, 42225724 - 42225765
Alignment:
| Q |
149 |
agaatgagtcaaaagcaaaaaacatctcacgattacccgtac |
190 |
Q |
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| T |
42225724 |
agaatgagtcaaaagcaaaaaacatctaacgataacacgtac |
42225765 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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